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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTTTGTTTACTCATGGGCTTGATATGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttgattttaggcaaaatgtgtgttcatttttatttgctcatgctgtaagtaatttgtgttatcttatcttttatcag

Basic information

species Glycine max
transcript GLYMA15G39380.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G39380.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g20970.1 (Oryza sativa), 5'ss of exon 6
TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTTTGTTTACTCATGGGCTTGATATGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttgatt-----ttaggcaaaatgtgtgttcatttttatttgc-tcatgctgtaa-gtaatt-tgtgttatcttatcttttatcag-------------
 || ||||||||||| |||||||| || || ||||| |||||||| || |||  ||||||||||||| | |||||||||||||| ||| |||| ||||| |||||| |   |  |||     |  || |   ||| | |  | || | | ||| |     |||   | |||| | ||  | | ||  |||  |                
AGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCATTATTTGGTCATGGGCTTGATGTAACTGAACTTCCAGGAATTTCTGGATGGCTTgtaagtcttattccattcccattctggtatcttgtatatggaattgtctctgcattgaattgttctgcaattctttgagaacgtacttttggtgttttggatatggcag

upper sequence: GLYMA15G39380.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G156238_T02 (Zea mays), 5'ss of exon 6
TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTTTGTTTACTCATGGGCTTGATATGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttgattttaggcaaaatgtgtgttcatt-tttatttgctcatgct-gtaagtaatttgtgttatcttatcttttatcag------------------------------
 |||||||||||||| |||||||| || |||||||| || |||||  |||||  |||||| |||||| | |||||||| ||||| ||| |||| ||||| ||||||  | ||  ||||     |   | |  ||   |  ||| |||  | |   | | | || |||    || ||||   |  |  |||                              
AGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGCTGTTTGGTCATGGACTTGATGTAACTGAACTCCCAGGAATTTCTGGATGGCTTgtaagtccatct-aatttagtttattgtttccgtctttcatttttttaattacatttgaatgtcattacaattttcttgggtact--cagtttccttattttttttaaaaaaaaattcag

upper sequence: GLYMA15G39380.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0138g00140.t01 (Vitis vinifera), 5'ss of exon 6
TGTATGCTTTGTTGAACCTCCATATTTTCAAATGACTGTCAAACCTTTGTTTACTCATGGGCTTGATATGACTGAACTTCCAGGCATTGCTGGGTGGCTAgtaagtataccttg-attttaggcaaaatgtgtgttc--atttttatttgctcatgctgtaagt--------aatttg-tg-ttatctt--atcttttatcag
 || |||||||  || || ||||||||||| ||||| || || ||| | || |||||||| |||||| | || ||||||||||| |||||||| |||||||||| ||||  |   || |||       ||  |  |   ||| | |||  |||    | ||  |        |||| | || |||| ||  |   || || ||
GGTGTGCTTTGCAGAGCCACCATATTTTCAGATGACAGTGAAGCCTATCTTCACTCATGGACTTGATGTTACAGAACTTCCAGGGATTGCTGGATGGCTAgtaattatatttcatatattatatctgctggcttcttgaattctcattctctctctttctacctttctccctaattggatgcttatttttgactcttgattag