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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctctctcactctccctctgaatttatcaacagctagtacgattttagaagtgatccttttttaatcttcttgtgtggccaccagataatattccccaagaatatgctgattgaccataactgtaaagtaactttttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcag

Basic information

species Glycine max
transcript GLYMA15G01520.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01520.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 5'ss of exon 6
GGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctctctcactctccctctgaatttatcaacagctagtacgattttagaagtgatccttttttaatcttcttgtgtggccaccagataatattccccaagaatatgctgattgaccataactgtaaagtaactttttttgttataaaaatatttataaaatttctgagtattttctcttatttgatcag
||||| |||||| |  |||| |||||| || |||||| |||| |||||||| ||||| || || |||||||| || |||||||||||||| || || ||||||||||||||       |||||||  |                   || |    |||            | | |  ||||| |  |       ||  |    ||||||   |  | ||  |||  ||  || |  | ||||   || |  |  |  ||  |||  |     ||  ||| | || ||| |  ||
GGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCTGCTTAAGgtctctctctc-------ccctctgtgtc-----------------gttgtgtgtgtg------------tgtgcacgtgtgcctgct------tacactgttagaataaattt-tagaaaatagttg--aactttcgttttccttttttcagtttgtttcaaacctaactggtcctttgttttctttaagtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938456|gb|BQ081728.1|BQ081728
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGC
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGC
EST: gi|26058655|gb|CA801569.1|CA801569
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|4313781|gb|AI460900.1|AI460900
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|37995957|gb|CF807546.1|CF807546
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|208247343|gb|GE048959.1|GE048959
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|151399034|gb|EV268905.1|EV268905
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|13477614|gb|BG507424.1|BG507424
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: gi|7233283|gb|AW568631.1|AW568631
EST:     TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG                         AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT