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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGATTCCATTCGGGCTTTATTCCCAGATAGAGAATGCTTCACTCTTGTGCGACCTCTGAACGATGAAAATGATCTACAGCGACTTGATCAGATATCGgttggtgttttaccagttaccatattcttttgtcattcattttgttgtctcatgacttgaaatttttatcttcaatgtgcag

Basic information

species Glycine max
transcript GLYMA13G30780.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30780.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G098129_T01 (Zea mays), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGATAGAGAATGCTTCACTCTTGTGCGACCTCTGAACGATGAAAATGATCTACAGCGACTTGATCAGATATCGgttggtgttttaccagttaccat-attcttttgtcattcattttgttgt-ctcatgacttgaaatttttatcttcaatgtgcag----------------
  | || ||||| || ||  | ||||||||||| |||||||| ||||||||||||||| ||||| |||| || ||||| || || || |||||  | || ||  || |||    |  |||  | | |  | ||   ||  |    |||| || |  |     ||    |||| |  ||                      
AAGGGAGTCCATCCGTGCCCTTTTCCCAGATAGGGAATGCTTTACTCTTGTGCGACCTGTGAACAATGAGAAAGATCTCCAACGCCTGGATCAACTTTCTgtaagtatttcttgaactacagtgaatggtctgctgtttgtggccttgtacttaaaatgctcaacacatatcatacatacatgataggtagagtcaaact

upper sequence: GLYMA13G30780.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGATAGAGAATGCTTCACTCTTGTGCGACCTCTGAACGATGAAAATGATCTACAGCGACTTGATCAGATATCGgttggtgttttaccagt--taccat--attcttttgtcattcattttgttgtctcatgacttgaaatttttatcttcaatgtgcag--------------------
 || ||||||||||| ||| | || ||||| |||||||| ||||| |||||||| ||||||||  ||||||||||||| |||||||| |||||||| |||||  || | | |    |  ||  ||  |||  |||||  || |        |   |    ||        | || |   ||| | |                    
CCGGGATTCCATTCGAGCTCTTTTTCCAGACAGAGAATGTTTCACCCTTGTGCGGCCTCTGAATAATGAAAATGATCTCCAGCGACTAGATCAGATTTCGgtcagtatctcatgtatgctattatttatttatttgtgtttaagaacccaattctagtttttttctcccctctcattggtgtactgagatcttgggttgtatgcag