Sequence
atgc intronic sequence ATGC exonic sequenceCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatgttgcatttttagttttagtcttttcacttgcatttgaaattatccgttgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
Basic information
species | Glycine max |
transcript | GLYMA12G05980.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 5'ss of exon 6
CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatgttgcatttttagttt-tagtcttttcacttgcatttgaaattatccgttgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
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GAGATTGCAACATTCTTCATGGACATAGTTAATTCTTCTCATAGCTATGCCACTGGTGGCACATCTGTCAGTGAGTTCTGgtaatgaacttgaatggttgaagttcacagaaatctttttcgg---tcacttaatgcccaaaatggat-tttgtcag--------------------------------------------------------------------------------------------
upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatgttgcatttttagttttagtcttttcacttgcatttgaaattatccgttgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
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GAAATCTCGATGTTCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAACAGGAGGAACATCAGTCAGTGAGTTCTGgtactaccattacctgactttagtctttg---gttcattgtaacatgactttttgttttaagtt-ctaaccatgatttgggaat--ggtaatattag-----------------------------------------------------------------------
upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G12960.1 (Arabidopsis thaliana), 5'ss of exon 6
CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatg--ttgcatttttagttttagtcttttcacttgcatttgaaattatccgt-tgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
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GAAATCCCGATGTTCTTTATGGACATAGTTAATGCTTCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAGTTCTGgtactaccattacttgactttagagtttggttctttgtaacatgactttttgttttaagtcttaaccatgatttg-----ggaatatttaacattag--------------------------------------------------------------------------
upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 6
CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatgttgcatttttagttttagtcttttcacttgcatttgaaattatccgttgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
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GCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTGgtattaatac---taatctgtaatttga-----ttgggtagtaaataaaaataat--gtgaaaaattat----cgcgtgtttgtctaagtaattgttggttttccttcacactcttatgatc----ctgcattgttt---tgatcattctgattgatcttacgagtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208147593|gb|GD944518.1|GD944518EST: AACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTG GAGTGATCCAAAGAGAATAGCAGACAACT
genomic: AACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacat ... tttttattagGAGTGATCCAAAGAGAATAGCAGACAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTGgtattaacatgttgcatttttagttttagtcttttcacttgcatttgaaattatccgttgaataattgtttgccacaagggcatcaaataaaaatgttctgcccctttattagttgataaccaattctagatttctttcttaactcttttacttcaattttttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG