1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCATGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactcattgcagttaagtaatatatatatatatataaagggacaatgttgtttaagtaattccatgtctgttctgatgttttcttttgtttacatttattttctgcag
species | Glycine max |
transcript | GLYMA11G19490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG AAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTTEST: gi|207797357|gb|GD769881.1|GD769881
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... ttttctgcagAAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATACAGCTTTTTCTTTGTT
EST: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG AAAGTTAGGTTTEST: gi|8284807|gb|BE022366.1|BE022366
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... ttttctgcagAAAGTTAGGTTT
EST: GTCCTGCTAATTTGTTCCGCANAATGGTGATGGAGATTGTGAGGAACAAG AAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATACEST: gi|6567149|gb|AW234774.1|AW234774
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... ttttctgcagAAAGTTAGGTTTTGGAAGAAAGTGTATGTTATATAC
EST: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAG AAAGTTAGGTTTTGG
genomic: GTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactc ... ttttctgcagAAAGTTAGGTTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAGTACTTTGAGAGCCTTCAGATTCCAGCAGCACAGATGGTCATGTGGTCCTGCTAATTTGTTCCGCAAAATGGTGATGGAGATTGTGAGGAACAAGgtaagtactcattgcagttaagtaatatatatatatatataaagggacaatgttgtttaagtaattccatgtctgttctgatgttttcttttgtttacatttattttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT