1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCCAATGAGGCTCGAGGTATGTATGAGAAGCTTAAATCTCATCCAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctggtgggcaatgttttttaggtctttctgcaaaatgatttgctaataacactgcaagctgaatttaaaagaactgtactttgtctagtgttt...
species | Glycine max |
transcript | GLYMA11G12160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAG GCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAACEST: gi|9259465|gb|BE347612.1|BE347612
genomic: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctg ... ctcttggcagGCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
EST: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAG GCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAACEST: gi|27809269|gb|CB063691.1|CB063691
genomic: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctg ... ctcttggcagGCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
EST: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAG GCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAACEST: gi|20814429|gb|BQ298907.1|BQ298907
genomic: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctg ... ctcttggcagGCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
EST: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAG GCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAACEST: gi|20448839|gb|BQ252963.1|BQ252963
genomic: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctg ... ctcttggcagGCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
EST: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAG GCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
genomic: CAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctg ... ctcttggcagGCTATGGAAATGATGAAGATGACAACAGGATCTCAATTTTATTTAAAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCAATGAGGCTCGAGGTATGTATGAGAAGCTTAAATCTCATCCAAATCCTAAAGTAAGCAAGAAAGCAAGACAGTTCATGTACAGCTTTCAGgtaatttctggtgggcaatgttttttaggtctttctgcaaaatgatttgctaataacactgcaagctgaatttaaaagaactgtactttgtctagtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaac