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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAATCTTAAGAAAAAATACCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGgtattgctgcatatctagaattgttaatactacatgatcattaattacaagagcaagctgaagctgtacaagtgctttgtgagctattcaaactcccaaa...

Basic information

species Glycine max
transcript GLYMA11G11060.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G11060.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv01s0010g01410.t01 (Vitis vinifera), 5'ss of exon 6
GGAAATCTTAAGAAAAAATACCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGgtattgctgcatatctagaat---tgttaatactacatgatca--ttaattacaagagcaagctgaagctgtacaagtgctttgtgagctattcaaactcccaaa
|||||||| || || || | |||||||||||| |||||||| ||||||| ||  | |||||| ||| | |||||||| || ||||| || |||||| |||||||| || |   || |   |   | ||| || ||   || ||  ||  ||     |   |    |||   || |||||  ||  |   |  ||   |  ||   
GGAAATCTCAAAAAGAAGTTCCGTGCCAAAACGCAGCAAGCCGAAGCTGGACAGGTGCTTCCAGGTGCTGGGCGTGCAGGATGGGAAGTAGAGGAATTAGgtatttctcctgttccactttctctcttactattaggagaccaaattcttttgttaaaagaatgaaagagttaaaagtgggttaaggatt--tctgtccacc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014412|gb|CX701154.1|CX701154
EST:     ACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAG                         GGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATG
genomic: ACGTGGGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTCGAGGAACTAGgtattgctgc ... cctatgacagGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGAAGGGAGCGCAATG