1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAGGAATCGCCGTGGGGTTCCTATAAGAAGGTTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattctttctttttgaatctttgcctcgcagatggctttcagcctctttggcttatttatcccaatgtcaacaggtgtttgggaataggaaataaaag...
species | Glycine max |
transcript | GLYMA10G34240.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAG GAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAEST: gi|9899095|gb|BE608063.1|BE608063
genomic: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattcttt ... catgtttcagGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
EST: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAG GAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAEST: gi|193633943|gb|FK581079.1|FK581079
genomic: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattcttt ... catgtttcagGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
EST: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAG GAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAEST: gi|192314587|gb|FK008123.1|FK008123
genomic: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattcttt ... catgtttcagGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
EST: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAG GAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCAEST: gi|192314588|gb|FK008124.1|FK008124
genomic: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattcttt ... catgtttcagGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
EST: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAG GAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
genomic: CCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattcttt ... catgtttcagGAGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGTGAAAGTCTGGACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAATCGCCGTGGGGTTCCTATAAGAAGGTTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGgtaattctttctttttgaatctttgcctcgcagatggctttcagcctctttggcttatttatcccaatgtcaacaggtgtttgggaataggaaataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa