Sequence
atgc intronic sequence ATGC exonic sequenceCAGGGTTTTCAAGTTGATTACTTAAATATTGGTGGTGGACTTGGGATAGATTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACAgtgaggacttgacctcagatattttatcttcccgtaatttatttgattatgtattaagtttgcaatcccttataagaataaggaatcactagtggatgat...
Basic information
species | Glycine max |
transcript | GLYMA10G06090.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G06090.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G11880.1 (Arabidopsis thaliana), 5'ss of exon 4
CAGGGTTTTCAAGTTGATTACTTAAATATTGGTGGTGGACTTGGGATAGATTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACA-
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--AGGCTTTGAGGTTAGCTACTTGAACATTGGTGGTGGTTTAGGGATAGATTATTATCATGCCGGCGCTGTCCTTCCTACACCCATGGATCTTATCAACACCgtaagaacaacagctcaaaactcttttctt----tatcttgatctcaaaagtactggaatggtagaatctttagaatcctggatgtgtttcatag-----
upper sequence: GLYMA10G06090.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G14390.1 (Arabidopsis thaliana), 5'ss of exon 4
CAGGGTTTTCAAGTTGATTACTTAAATATTGGTGGTGGACTTGGGATAGATTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACA-
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--AGGTTTTGAAGTTAGTTACTTGAACATTGGTGGTGGTTTAGGGATTGATTATTACCATGCCGGCGCTGTCCTTCCCACACCCATGGATCTCATCAACACTgtaagaacaacatctctttcgttcatttgatctcaaaagtagtgggatggtagaattg--ttacaatccttgatgtgttccag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9204059|gb|BE330283.1|BE330283EST: TTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACA CATATCGAACTGGTTTCCCCTGCCCCAGCAGATGCTGAGATAGCAAAGTTT
genomic: TTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACAgtgaggactt ... ttcgttgcagCATATCGAACTGGTTTCCCCTGCCCCAGCAGATGCTGAGATAGCAAAGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGGGTTTTCAAGTTGATTACTTAAATATTGGTGGTGGACTTGGGATAGATTATCAACATTCCGGTGCTGTCCTTCCTACACCCAGAGATCTCATTGACAgtgaggacttgacctcagatattttatcttcccgtaatttatttgattatgtattaagtttgcaatcccttataagaataaggaatcactagtggatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC