Sequence
atgc intronic sequence ATGC exonic sequenceCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcagagactgcatattgggttttatatcctgtctgcttatgtcctttgtgatattgctttctgtcatttggacaaagcattcacaaaattctggacagaacaattgaaaagcattccaacaaacttaaattctgttgcttcaatttatatacactcattttatttgcag
Basic information
species | Glycine max |
transcript | GLYMA10G05090.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 5'ss of exon 6
CTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgta-aatgcagagactgc-atattgggttttatatcctgtctgcttatgtcctttg-tgatattgctttctgtcatttggacaaagcattcacaaaattctggacagaacaattgaaaagcattccaacaaacttaaattctgttgcttcaatttatatacactcattttatttgcag
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CTTCTTAATGTGAGCACAAATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgctgccacaaccaaactatggttgagtgactgt--actaaactagtaggctaacctagtacaatttcatctgacgcttgggttttgacaatgcag----------------------------------------------------------------------------
upper sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 7
CTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcagagactgcatattgggttttatatcctgtctgcttatgtcctttgtgatattgctttctgtcatttggacaaagcattcacaaaattctggacagaacaattgaaaagcattccaacaaacttaaattctgttgcttcaatttatatacactcattttatttgcag
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CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgtata------acttatttctt---tctcatttttcctccatgcaagtgcttgacaaagttagtttac-tcgt-------gaatctttgcag-----------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16277576|gb|BI942452.1|BI942452EST: AAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAG GGGGCGCTTTTAAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCA
genomic: AAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcag ... ttatttgcagGGGGCGCTTTTAAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcagagactgcatattgggttttatatcctgtctgcttatgtcctttgtgatattgctttctgtcatttggacaaagcattcacaaaattctggacagaacaattgaaaagcattccaacaaacttaaattctgttgcttcaatttatatacactcattttatttgcag
- - - - - - - - - AAGAAG
- - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA