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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcacttttccctagtatattcaaaatttaggtatacccagagctcttttaagagaatatgcatcctctaagttatatttaaataggatgatctg...

Basic information

species Glycine max
transcript GLYMA09G08190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08190.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G05830.3 (Arabidopsis thaliana), 5'ss of exon 6
CACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcacttttcc-ctagtatattcaaaatttaggtatacccagagctcttttaagagaatat-gcatcctctaagttatatttaaataggatgatctg-------
 || || |||||||||||||| || ||||||||||||||||| |||| |   ||| |  || |||| || || ||||||||||| || |||||||||||||| |    |||  |    || ||  ||     | |   |||    |||        ||||     | | || |  |||||| |     |  |  || | ||        
TACCGCCGGATATGGTACTGCCCTCGGTGTCATCCGTGCACTCCATACTCAAGGAATCTTAGAAAGAGCATACTGCACAGAAACTCGTCCATTTAATCAAgtaaa---actcctaaattaatactttttctttctcaatatcgtaagaag------aagaatccgtagaataccttaagttgttagggacgataattacctctatattg

upper sequence: GLYMA09G08190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g00830.t01 (Vitis vinifera), 5'ss of exon 7
CACAGCTGGATATGGTACTGCTCTGGGTGTCATCCGTGCACTTCATAGTGCCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcacttttccctagtatattcaaaatttaggtatacccagagctcttt-taagagaatatgcatcctctaagttata--tttaaataggatgatctg
 ||||||||||||||||||||||| ||||| |||||| |  |||||  ||  ||| || ||   ||||| ||||||||||| ||||| ||||| || ||||||||     | |  | || | |||| |   |||   |   |     || | |  |      |||   |      |||| | |   ||  | |  ||| |   
AACAGCTGGATATGGTACTGCTCTCGGTGTAATCCGTTCCGTTCATGCTGAAGGAATTTTACTGAGGGCCTATTGCACAGAGACACGTCCATTCAACCAAgtgagcat-ttgtcacttaatttatttatggttttcattagcatcatgcacatgattttctgatagatacaagtgaagtcacagacttggacaaaatggta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411952|gb|EV281763.1|EV281763
EST:     CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAA                         AGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAG-AACT
genomic: C-GGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
EST: gi|151406212|gb|EV276027.1|EV276027
EST:     CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAA                         GGATCTAGACTTACTGCCTTTGAGTTGGTGCATG
genomic: CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATG
EST: gi|192321692|gb|FK014036.1|FK014036
EST:     CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATTAA                         GGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
genomic: CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
EST: gi|151409355|gb|EV279163.1|EV279163
EST:     CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAA                         GGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAA
genomic: CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAA
EST: gi|254341135|gb|GR854863.1|GR854863
EST:     CCGGAG-TCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAA                         GGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
genomic: CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
EST: gi|21600546|gb|BQ610877.1|BQ610877
EST:     CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAA                         GGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT
genomic: CCGGAGTTCTAAAAAGGGCTTATTGCACAGAAACACGCCCATTTAATCAAgtgagtgcac ... ttaattgcagGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGGAACT