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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatattggctttgtaaggtatatagtgcatagtgttagtttacttggtctttgactctattttgaaatttcctctttgataaatctttggtgtaat...

Basic information

species Glycine max
transcript GLYMA09G06890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 7
GGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatattggctttgtaaggtatatag--tgcatagtgtta-gtttacttggtctttgactctattttgaaatttcctctttgataaatctttggtgtaat
|| || || ||||| ||||||||||| | ||||||||||||||| ||| | || ||| ||||||||||||||||   ||| | |   | |   || |    ||  || |  || | |   ||  | | | | || | ||| | |     | | || |  ||   ||       
GGGATAAAAGAAGGCTGGTATGATGGAGCAAGCATTGCTTTTGCTGTTCTCCTAGTTGTTGTTGTTACAGgtatgtaattagttagatcaatcatcttacctgattatttctatggtcgattaatatgttaatccacttttagaaggtttatctgttgcattactgtcag---

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatattggctttgtaaggtatatagtgcatagtgttagtttacttggtctttgactctattttgaaatttcctctttgataaatctttggtgtaat
|||||| |  | |||||||| |||||    |||||||||||||| ||| ||||||| ||||| || |||||||||    |  |||  | |  |   |  | || ||||   | |   |  || ||  |||   || |  |  |    | |||  |               
GGTATCGAAAAGGGATGGTACGATGGTATCAGCATTGCTTTTGCCGTTCTTCTTGTCATTGTGGTGACAGgtattgatattccttgctgatttcactcataca-agtgactgctgcgt--gtattgtactaatttgtatacctcttcccttggcag--------------

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 8
GGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatattggctttgtaaggtatatagtgcatagtgttagtttacttggtctttgactctattttgaaatttcctctttgataa--atctttggtgtaat-------------------------
|||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||| |||||||| || |||| |   ||  |||  |    | | |  |   |  | |||| |  ||      |||  ||    || | ||      ||||||||  |   ||  ||| ||                         
GGTATCAAAGAAGGATGGTATGATGGAGGAAGCATTGCATTTGCTGTGATTCTTGTGATTGTTGTGACGGgtaat---ttaacttgtttcacttttttctttttctttttaggtgtctacagacttgtttca--cttaatataataattttgataatgactcttactgtgattttgatgctttcttctcctctgcag

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 9
GGTATCAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatattggctttgtaaggtatatagtgcatagtgttagtttacttggtctttgactctattttgaaatttcctctttgataaatctttggtgtaat--
||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| ||||   || |    || |     |||    | |   |||| | ||  | | | | |||  |  |      | ||  ||  |      | | |  
GGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTTACAGgtattaaattgtacttatttt-taaacttaccatttcctcatactact-gatccgtaattttttttctatctggtaattgtgggaagacagactaggagtcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193357966|gb|FK318978.1|FK318978
EST:     TGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAG                         CTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGA
genomic: TGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatatt ... tgttttgtagCTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGA
EST: gi|208027309|gb|GD825777.1|GD825777
EST:     TGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAG                         CTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGA
genomic: TGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGgtattatatt ... tgttttgtagCTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGA