1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtcttaactgcttgtattttttgactgcttaaaattttctgttgtacatgttttgatttaacaatttgtcatttttttgtgcttttttgcttttggcag
species | Glycine max |
transcript | GLYMA08G23930.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCT GGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGEST: gi|207786865|gb|GD755352.1|GD755352
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGG
EST: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCT GGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGEST: gi|16348403|gb|BI973998.1|BI973998
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTG
EST: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCT GGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAEST: gi|151410032|gb|EV279840.1|EV279840
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAA
EST: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCT GGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGGEST: gi|9820141|gb|BE555651.1|BE555651
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGG
EST: TTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTATTTGTATTCT GGAATCCCTGAAGCAGCCGAAGTTGCTGTGCCAGTTCCCCAAACAGCTGGTEST: gi|120495849|gb|EH224016.1|EH224016
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAGCTGGG
EST: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCT GGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAG
genomic: TTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtctta ... cttttggcagGGAATCCCTGAAGCAGCAGAAGTTGCTGTGCCAGTTCCTCAAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGACATGGGTGGTGGCAATTGGGACAGAGACACAGTTAGTCGTGCTCTTCGAGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTgtacgtcttaactgcttgtattttttgactgcttaaaattttctgttgtacatgttttgatttaacaatttgtcatttttttgtgcttttttgcttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT