Sequence
atgc intronic sequence ATGC exonic sequenceGTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaagtttttgtgtataaattattcaatatttttctgattatttaaaacatttggggtatctttattacgtcagtccttaacatatataatatac
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G21840.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaagtttttgtgtataaattattcaatatt--------tttctgattatttaaaacatttggggtatctttattacgtcagtccttaacatatataatatac--------------------------------------------------------
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-----------------------GGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACATCATGTTCATGGGCTTTTCAACGCTTTATTTGCTCCTCTTTACGCACGGTCTTTGgtaacttatactattgagatttgctttggctagct--ctttcaaaatacattaccttcggaaaacatcaggctagttttaggtttttaattgattttcacattcctttttcaag
upper sequence: GLYMA08G21840.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 6
GTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaa----gtttttgtgtataaattattcaatattt--ttctgattat---------ttaaaacatttggggtatctttattacgtca-gtccttaacatatataata-tac----
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-----------------AGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAAAGATATCAATTTCTCATgttaagtacagtttgaccttaccacttgtggaatattttcatgaattcatggcattgtcttgccttatgctattaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18039709|gb|BM308003.1|BM308003EST: ATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATC ATGTTCATGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGCTCCA
genomic: ATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCatatccttga ... tataatatacATGTTCATGGGTTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGCTCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCAAACTTTGACAAAAGCATGGGAGTACACATCTGCTGATCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaagtttttgtgtataaattattcaatatttttctgattatttaaaacatttggggtatctttattacgtcagtccttaacatatataatatac
- - - - - - - - - - - - - - - - - - GCTGAT