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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGgttagttacagtggcaaattttggtacacttaaatctctcgagtcgaagctgttcttatttataaaatttggtttctctaaagcgagtaatttactttag...

Basic information

species Glycine max
transcript GLYMA08G15220.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15220.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g33490.1 (Oryza sativa), 5'ss of exon 5
GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGgtta----gttacagt---ggcaaattttggtacacttaaatctctcgagtcgaagctgttcttatttataaaatttggttt--ctctaaagcgagtaatttactttag--------------------------------
| ||||||| |||||||||| ||| ||||||||||||||  | ||||||||      ||| || |   |  || | ||  |      |  |   |    |  ||  ||      | |  |   |||| ||      |  | | |||  ||| ||   |                                
GGCTTGGTCTTACCATAATGGAGGTTCCTGGCCAACACTATTGTGGCAGgtacttgtgtttcattgctgataagtgttcatttgtccagtttagtgccatgaaaaatgaaaccttgtccatgttttgtttgaatattggaaccagttttttcctcctgtttaaagtttccaatcaacccctcatttgcag

upper sequence: GLYMA08G15220.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g32730.1 (Oryza sativa), 5'ss of exon 6
GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGgttagtta--cagtggcaaattttggtacactta-aatctctcgagtcgaagctgttcttatttataaaatttggtttct--ctaaagcgagtaatttactttag--------------------------------------------------
||||||||| || ||||||| ||| |||||||||||| || | ||||||||| ||||  | ||  |||| |||  |    ||    |       |  ||   |||| |||  |     |    |||| |    | |      |||| ||| |                                                    
GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttattctgtaacaaagttttttttttttgtggttgaaattgctgactttgtttttacctgatgcagacagtttgtagtaacaattgacaattcactatgatttgtttgctcaacatatagttgctgagaaattactttctttgcgtgcag

upper sequence: GLYMA08G15220.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0074g00720.t01 (Vitis vinifera), 5'ss of exon 7
GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGgttagttacagtggcaaattttggtacacttaaatctctcgagtcgaagctgttcttatttataaaatttggttt---ctctaaagcgagtaatt-tactttag----
|||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |       || |||||||  |  |   | | | |      | || |  |||||   || ||| ||  |    | | |  | ||| ||  || | |||    
GCCTTGGTCCTACCATAATGCAGGTTCCTGGCCAACTTTGCTCTGGCAGgttagtcatg-----aatttttggtcaatct---tttgttggtaaacatctttgtttattatcaatattaggaatgcattttgagactagtgatggtaatatagtttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021713|gb|CX708454.1|CX708454
EST:     GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG                         CTCACCGTTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCT
genomic: GCCTTGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAGgttagttaca ... cctattgcagCTCACCGTTGCATGCATAAAGATGAAGAGAACACATATTGCTGCAAAAGCT