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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACTCTTGTGCGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcagctggcatattcttttgtagtcattttgttgtcccttaactttttgatattttatcttaaatatgcag

Basic information

species Glycine max
transcript GLYMA07G32290.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G098129_T01 (Zea mays), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACTCTTGTGCGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcagctg--gcatattcttttgtagtcattttgttgtcccttaactttttgatattttatcttaaatatgcag----------------
  | || ||||| || ||  | |||||||| ||||||||||| ||||||||||||||| ||||||| || || ||||| || || ||||| ||  | || |||||||     | | ||   |   ||  | |  |  |  |    |||| | | || |  |  | |  | ||| || |||                     
AAGGGAGTCCATCCGTGCCCTTTTCCCAGATAGGGAATGCTTTACTCTTGTGCGACCTGTGAACAATGAGAAAGATCTCCAACGCCTGGATCAACTTTCTgtaagtatttcttgaactacagtgaatggtctgctgtttgtggccttgtacttaaaatgctcaacacat-atcatacatacatgataggtagagtcaaact

upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACTCTTGTGCGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcagctggcatattcttttgtagtcattttgttgtcc---cttaactttttgatattttatcttaaatatgcag--------------------
 || ||||||||||| ||| | || |||||||| ||||| ||||| |||||||| ||| |||| || ||||||||||| |||||||| || ||||| || || |||| |  ||         ||||  ||| |     |||      ||     ||  |||||  |    | || |   | | | |                    
CCGGGATTCCATTCGAGCTCTTTTTCCAGACAGAGAATGTTTCACCCTTGTGCGGCCTCTGAATAATGAAAATGATCTCCAGCGACTAGATCAGATTTCGgtcagtatctcatgtatgctattatttatttatttgtgtttaagaacccaattctagtttttttctcccctctcattggtgtactgagatcttgggttgtatgcag

upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ26676 (Selaginella moellendorffii), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACTCTTGTGCGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcagctggcatattcttttgtagtcattttgttgtcccttaactttttgatattttatcttaaatatgcag
|||||| ||||| || ||||| || ||||||||| | ||||||||||||||||| ||  ||||  | ||  |||| || ||| |||| || |   || ||||| ||   |     |||       || || ||  || |  |   || |||  |                             
TCGAGAGTCCATCCGTGCTTTGTTTCCAGACAGGCATTGCTTCACTCTTGTGCGGCCCGTGAATGAGGAGCATGACCTCCAGAGACTTGATCTTTTACCAgtacgttgtc-----gctatttcggtcgttcgt--tcctcatacagtgcctacag----------------------------

upper sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 6
lower sequence: EFJ26960 (Selaginella moellendorffii), 5'ss of exon 6
TCGAGATTCCATTCGGGCTTTATTCCCAGACAGGGAATGCTTCACTCTTGTGCGACCTTTGAACAACGAAAATGATCTACAGCGACTGGACCAGATATCAgtaagtaacctatcagctggcatattcttttgtagtcattttgttgtcccttaactttttgatattttatcttaaatatgcag
|||||| ||||| || ||||| || ||||||||| | ||||||||||||||||| ||  ||||  | ||  |||| || ||| |||| || |   || ||||| ||   |    |  | |    ||| ||     ||||   |   | |||  |                             
TCGAGAGTCCATCCGTGCTTTGTTTCCAGACAGGCATTGCTTCACTCTTGTGCGGCCCGTGAATGAGGAGCATGACCTCCAGAGACTTGATCTTTTACCAgtacgttgtc-gctatttcggtcgttcgttc---ctcatacagccttgcctacag----------------------------