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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAGATCAGTTGCAGCATGCCAAAGACAGTGTCTCTACTATGCAGAAATTGCATGAACTCGCACAAAACCAGTTGTTTGAACTCCGTGCCCAATCTGgtaaacaaatagttttcatttcaattttattcttacacttaacttgaatctgtaacatcagttcttacattattttataatatgcatattgagagttaagactgattctcctaatattatttaatattgaagaaaatgatcccctgttttcttgaaaacttcag

Basic information

species Glycine max
transcript GLYMA07G09890.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09890.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 6
CTGCAAGATCAGTTGCAGCATGCCAAAGACAGTGTCTCTACTATGCAGAAATTGCATGAACTCGCACAAAACCAGTTGTTTGAACTCCGTGCCCAATCTGgtaa-acaaatagttttcatttcaattttattcttacacttaacttgaatctgtaacatcagttcttacattattttataatatgcatattgagagttaagactgattctcctaatattatttaatattgaagaaaatgatcccctgttttcttgaaaacttcag
 |||||||||||||   ||| || |||||||| ||||| |||||||| |||||||||||  | ||||| |||||  | |||||||||||||| ||||| |||    ||   ||  || || |      |  | ||   |||   |   |  || ||        |||||||  | ||    |     | |||  | |  |       | |    | |  ||                                            
TTGCAAGATCAGTTAAGGCAAGCAAAAGACAGCGTCTCCACTATGCAAAAATTGCATGAGTTAGCACAGAACCAACTTTTTGAACTCCGTGCTCAATCAGgtggtgcattgagccttaatatggtgactcatattgtgctt---tcataattggaatggtctcccttacatattgttcc--ttcttgtcttgttaatatatgtcacctttgtctaaaccatcag-----------------------------------------

upper sequence: GLYMA07G09890.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 6
CTGCAAGATCAGTTGCAGCATGCCAAAGACAGTGTCTCTACTATGCAGAAATTGCATGAACTCGCACAAAACCAGTTGTTTGAACTCCGTGCCCAATCTGgtaaacaaatagttttcatt-tcaattttat-------tcttacacttaacttgaatctgtaacatcagttcttaca-ttattttataatatgcatattgagagttaagactgattctcc-taatattatttaatattgaagaaaatg----atcccctgttttcttgaaaacttcag
 |||| ||||| || |  || || ||||| ||||| |||| |||||||||| | |||||||| ||||||| |||| |||||||||| ||||||||||| |||||     |  || | | | |||||   ||       | |||   ||  |||||   |||       ||    | | | | ||| |   || | |    |  |    || ||||| | | |  ||||  ||    || || |   |     | |     |||  |  | ||||||||
TTGCAGGATCAATTACGACAAGCTAAAGAAAGTGTTTCTAATATGCAGAAACTACATGAACTTGCACAAAGCCAGATGTTTGAACTTCGTGCCCAATCAGgtaagatgctcattctgaatgtcaataccatgtcattattttattatttgcttgaccgtgttcttggtgtcacaagaatcactttttttcatccttccccatggcagggagtgatttttcattttattccttgtctttaaatagcttatgccaacttacctttattcaataacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327958|gb|GR834923.1|GR834923
EST:     CTCGCACAAAACCAGTTGTTTGAACTCCGTGCCCAATCTG                         AGGAAGAGAGGGCATCTAAGCAATCAGAAGTCAATCTTCTGATGGATGAAG
genomic: CTCGCACAAAACCAGTTGTTTGAACTCCGTGCCCAATCTGgtaaacaaat ... aaaacttcagAGGAAGAGAGGGCATCTAAGCAATCAGAAGTCAATCTTCTGATGGATGAAG