1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatgatttacattttgttcccattttttccctttctttatcattttgtaacacttcaaatttttgcaaattgctccttcaaagttggagaaaaaatgacactaaaatatcaataatgttttag
species | Glycine max |
transcript | GLYMA07G08700.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG GCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGEST: gi|7589693|gb|AW705462.1|AW705462
genomic: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatga ... aatgttttagGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGG
EST: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG GCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGEST: gi|15664588|gb|BI701959.1|BI701959
genomic: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatga ... aatgttttagGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGG
EST: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAG GCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGG
genomic: CTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatga ... aatgttttagGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAACGGCGAAAGCTGCTATTTGTTCTTTACCTAATGAGAGATCCATTTTTCAGCAAGTATACTAGgtagcaatgatttacattttgttcccattttttccctttctttatcattttgtaacacttcaaatttttgcaaattgctccttcaaagttggagaaaaaatgacactaaaatatcaataatgttttag
- - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG