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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgataagtttttcttttaatgtttcaagactggattttgtagcatgttgacagtaatatgatttgatgtagaag

Basic information

species Glycine max
transcript GLYMA06G15380.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343935|gb|GR857691.1|GR857691
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAAGGGGCAGGGGT
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAA-GGGGCAGGGGT
EST: gi|120534511|gb|EH262644.1|EH262644
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
EST: gi|298186819|gb|HO037452.1|HO037452
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298186819|gb|HO037452.1|HO037452
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298186819|gb|HO037452.1|HO037452
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|120534428|gb|EH262561.1|EH262561
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
EST: gi|120530869|gb|EH259002.1|EH259002
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAA-ATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
EST: gi|298175747|gb|HO018344.1|HO018344
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298175747|gb|HO018344.1|HO018344
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298175747|gb|HO018344.1|HO018344
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|15337539|gb|BI498195.1|BI498195
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
EST: gi|20449683|gb|BQ253807.1|BQ253807
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAG                       
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAA-G-G-AGgtgagttgat ... gatgtaga
EST: gi|24136070|gb|BU926580.1|BU926580
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAG                       
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAA-G-G-AGgtgagttgat ... gatgtaga
EST: gi|298172713|gb|HO019753.1|HO019753
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298172713|gb|HO019753.1|HO019753
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|298172713|gb|HO019753.1|HO019753
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAG                         A
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaag-
EST: gi|254343936|gb|GR857692.1|GR857692
EST:     TCTTCCAGTTGATCAAGTAAAACC-TTAAATGAATATGAAGAGGAAGGAG                         GCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgat ... gatgtagaagGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTA
EST: gi|26268500|gb|CA819563.1|CA819563
EST:     TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAG                       
genomic: TCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAA-G-G-AGgtgagttgat ... gatgtaga

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGgtgagttgataagtttttcttttaatgtttcaagactggattttgtagcatgttgacagtaatatgatttgatgtagaag

- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG