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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcag

Basic information

species Glycine max
transcript GLYMA05G26450.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 6
lower sequence: AT2G39080.1 (Arabidopsis thaliana), 5'ss of exon 7
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttg-gctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcag
|||||||| || ||  ||||||||||| ||||||| ||   | |||  | |||||||||||||||||| || ||||||||||| ||||   |||||||||  | |||||| | | |||| | |  |   || |     ||  |      ||     |    |  |||   || |                                                               
GATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGgtaatgctgctttcgttctaactt-tgagattactttctaac-ttttgatgagacat------caaatgtttgacccctcactcttctcag------------------------------------------------------------

upper sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 7
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcag
||||||||||| ||  |||||||||| |||||||| ||    | ||| |||||||||||||||||||||||||||||  | || ||||       |||||   | ||| || |  | | | ||||  | |||  ||       | | |   | |||   | | | ||  |   |  ||| |  | | | ||        |||  | ||  ||                        
GATGCAGCTTCTCTAGCAGTTGCAATTTTGAAGAAGAAACGGCATGGTCAGATTTTCTTGGGTTGTGATAATCATCCCGTATCCAGgt-------tttcttactcact-gttatttgagtattgagaaatctaccaaa-----tttacagataaat---attattatattagctgcttcatata-tgtctgcaccttgtaaatttccttgcag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825955|gb|BE209685.1|BE209685
EST:     AACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAG                         GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATT
genomic: AACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgct ... gtgttttcagGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATT
EST: gi|120494805|gb|EH222972.1|EH222972
EST:     AACTTGCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAG                         GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATT
genomic: AACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgct ... gtgttttcagGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATT
EST: gi|8826056|gb|BE209848.1|BE209848
EST:     AACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAG                         GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCANTAAAAAATT
genomic: AACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggctgct ... gtgttttcagGCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATT