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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAGgtgggctgtgggttttatttttctccatattgatatttgctaggttgcctgcctgctaactggtttgggaatttag

Basic information

species Glycine max
transcript GLYMA05G23670.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 6
GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAGgtgggctgtggg-ttttatttttctccatattgatatttgctaggttgcctgcctgc---taactggtttgggaatttag------------
|| || ||||||||||||||||||||||| ||||| ||||| || ||||||      | |  ||||||     |   |   | | | |     ||||  |  |||    | |||||||| | | ||||             
GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgtatgactggttttgcattttatggaaacggttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151413117|gb|EV282925.1|EV282925
EST:     GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG                         GTAGTGTTCTGCGTTGTGATGTCACTG
genomic: GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAGgtgggctgtg ... gggaatttagGTAGTGTTCTGCGTTGTGATGTCACTG
EST: gi|16349156|gb|BI974751.1|BI974751
EST:     GGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAG                         GTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTCATGAAGTGCTTTC
genomic: GGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAGgtgggctgtg ... gggaatttagGTAGTGTTCTGCGTTGTGATGTCACTGGGAAGATTCTCATGAAGTGCTTTC