Sequence
atgc intronic sequence ATGC exonic sequenceCATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtgccaaattctgttgctattgctatttgctaccatctttattcgcacatgcagctaattgttttacctttaccgcag
Basic information
species | Glycine max |
transcript | GLYMA04G38010.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 6
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgt-gccaaattctgttgctattgctatttg-----ctaccatctttattcgcacatgcagctaattgttttacctttaccgcag--
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CATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGgtatgttatcttgtttccttgtttttactgcgtgaggagttgacattttaatttcatggtgtaa--gagtgctggaaattttctatgtag
upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtat-gtgccaaattctgttgctattg--ctatttgctaccatctttattcgcacatgcagctaattgttttacctttaccgcag----------------
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CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgatag-gtataatggtgatatatcagttttattcatagttgttgactcaggaaa
upper sequence: GLYMA04G38010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtg--ccaaattctgttgctattgctattt-gctaccatctttattcgcacatgca---------gctaattgttttacctt-taccgcag----------------------------
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TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209720121|gb|BW651150.1|BW651150EST: ATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAG TCTCCACAAATGGGAAGGAGAGCTGCACCTGAAAGTGTTGTTGAACCAGAG
genomic: ATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtgcca ... tttaccgcagTCTCCACAAATGGGAAGGAGAGCTGCACCTGAAAGTGTTGTTGAACCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGAGGCAGTTGTTGAGCAGGTTCGTGATGGCAGTACACTCCGTATCTATTTGCTCCCGGAGTTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatgtgccaaattctgttgctattgctatttgctaccatctttattcgcacatgcagctaattgttttacctttaccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA