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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagctcttctcatgtacttgcataatggcttttgatacttctattctctctgtggtctgagaaaagactatcgagttttacattttgtctggtgtgaa...

Basic information

species Glycine max
transcript GLYMA04G04000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04000.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g52410.1 (Oryza sativa), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagctc----ttctcatgtacttgcataatggcttttgatacttctattctctctgtggtctgagaaaagactatcgagttttacattttgtctggtgtgaa----
 |||   |  || ||||||||||||||||||||||| |||||||| |||   ||||||||||  ||  |||| ||||||||||| || ||| ||||| | |||  |||    || |  | || ||    |    |  |||| | | |    ||   | |   |          || |   |||||   |||      |||| |     
TGAACTAAGGTGTAATATATGGGTTTATTGCCCATCAGAGTTTGGATGTTTCTCTCCAGATAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGgtatactcagttttgttctatatttatgcaccaaccattgaaattacagcccttaatatttgc--------atctttattgttttcagtttaaatgagtgttagaacc

upper sequence: GLYMA04G04000.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G384260_T01 (Zea mays), 5'ss of exon 4
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaa-gctcttctcatgtacttgcataatggcttttgatacttctattctctctgtggtctgagaaaagactatcgagttttacattttgtctggtgtgaa-
||||  ||| |||||||||||||||||||||||||| || ||||| ||    |  | ||| |  ||  |||| ||||||||||| || ||| ||||| | |||  ||   |||  | ||  ||  |  | ||        |  |  ||   | | | |         ||   |||   || | |||  |   |   |  || 
GGAATTGAAGTGCAATATATGGGTTTATTGCCCATCGGAATTTGGATGCTTCTGACAAGACAAATATGAGCATAAACATCAGGAGTGCTGGTTGAAACAGgtagcgcatgtctgttctatatgtgttttagcaaccaccgcaaccctttgatttttagatgactgtcag--catctgattcttcatgattctttaagcaaag

upper sequence: GLYMA04G04000.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G33380.1 (Arabidopsis thaliana), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagctcttctcatgtacttgcataatggcttttgatacttctattctctctgtggt--ctgagaaaagactatc--gagttttacattttgtctggtgtgaa--------------
 |||| || ||||||||| |||||||||||||||||||||||||| |||   ||||||||||| ||  |||| ||||||||||| |||||||| ||||| |||||  |||  |  ||||   |||| |   ||     | ||  | | ||  || | |  ||     |||     |  ||   ||   |  | ||   | ||                
AGAAACGAGATGCAATATTTGGGTTTATTGCCCATCTGAGTTTGGTTGTTTCTCTCCAGATATTTATGAGCATAAACATCAGGAGTGTTGGCTTAAATACgtaagaacttacctcgtac--acatactactttacccaattttcagtttccttgagattactcgtccaagttggactggaagcttggctcatatccaatatgtctatgtgaattgcag

upper sequence: GLYMA04G04000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv18s0001g10750.t01 (Vitis vinifera), 5'ss of exon 6
GGAAAAGAAATGCAATATATGGGTTTATTGCCCATCTGAGTTTGGGTGTCATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagct----cttctcatgtacttgcataatggcttt-tgatacttctatt-ctctctgtggtctgagaaaagact-atcgagttttacattttgtctggtgtgaa-----------------------------------
 ||||||||||||||||||||||| ||||||||||| |||   |||||   ||||||||| || ||  | |||||| ||  ||| || |||||||||||||||||||    ||| |  |    ||   |     |||  |  | ||||| |  ||  |  || |||     || | |     |  ||| ||||  |  | |  | |                                    
TGAAAAGAAATGCAATATATGGGTGTATTGCCCATCCGAGACAGGGTGCTTTTCTCCAGACATTTATGAACACAAAAATGGGGAGTGCTGGCTGAAATATgtaagcttcagcttatttttccattaagttggaacttcatcgtccttctttcacttccaatgatctattggaatatttgcttaaattttcattagggttcggctcagtctaatattcttgttttttcaattttgaaaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320347|gb|GR831155.1|GR831155
EST:     ATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATAT                         GCTGAGAAACCTCGATTAAATTTTAAGGATAAGTATCCTGAATCATATCGA
genomic: ATTCTCCAGATATCTACCAGCACAAACATCAGGAATGTTGGCTGAAATATgtaagctctt ... ttgaatccagGCTGAGAAACCTCGATTAAATTTTAAGGATAAGTATCCTGAATCATATCGA