1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattatgtagattttaatgcattgatttgaatgatacgatgcaaggctcttaaacatgattatttttaacccattttcag
species | Glycine max |
transcript | GLYMA03G39530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG -TCGGTGCCCATTATTTTGAGGAAG-AAATGTGCAGTTAGATGCAAEST: gi|192303326|gb|FG995620.1|FG995620
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAA
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|37997277|gb|CF808866.1|CF808866
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|151403727|gb|EV273537.1|EV273537
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|7692294|gb|AW760404.1|AW760404
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCATAGATGAACAACAAACAGTGGAAGTAAATGGTAAAATGCAC GTCGGAGCCCATTATTTTGAGGAATGAAATGTGCAGGTAGATGCGAAACATEST: gi|192303311|gb|FG995619.1|FG995619
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAA-TGCAG GTCGGTGCCCATTATTTTGAGGAAG-AAATGTGCAGTTAGATGCAAA-CATEST: gi|37996140|gb|CF807729.1|CF807729
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: GTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|298184842|gb|HO030055.1|HO030055
genomic: GTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|9987385|gb|BE661493.1|BE661493
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|151397822|gb|EV267695.1|EV267695
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGEST: gi|58019780|gb|CX706522.1|CX706522
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGG
EST: TTGAGTTCAAAGATGACCAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACATEST: gi|10231910|gb|BE800798.1|BE800798
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAG GTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCGAAACATEST: gi|151399910|gb|EV269781.1|EV269781
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGAGGAAGGAAATGTGCAGTTAGATGCAAAACAT
EST: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGG-TAAA-TGCAG -TCGGTGCCCATTATTTTGA
genomic: TTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattat ... ccattttcagGTCGGTGCCCATTATTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACGGAAGTTGGTGTTCAATATGGAATATTGAGTTCAAAGATGAACAACAAACAGTGGAAGTAAAGGGTAAAATGCAGgtaatattatgtagattttaatgcattgatttgaatgatacgatgcaaggctcttaaacatgattatttttaacccattttcag
- - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG