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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgtttaaaactcttgatgtgtgagtgcaataatgatagtttgtctctgaccatataatcactttgattagtccctcaagacttgtgcatttgc...

Basic information

species Glycine max
transcript GLYMA03G24280.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 5'ss of exon 6
GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagttt--gtttaaaac-tcttgatgtgtgagtgcaataatgatagttt-gtctctgaccatataatcactttgattagtccctcaagact----tgtgcatttgc-----------------------------------------------------
|| |||||| | ||||| ||||| || ||||| || || |||||| | ||||| ||||||||||| |||||||||||    | | ||   |  | ||   ||| | ||   | |  ||||  |  | | |   ||  || |  |||   |  |    || | |    | ||| |||                                                       
GTAATGAATCTTATTGGAGATGTTAGAGGAAAAGTGGCTGTTATGATGGATGATATGATTGATACAGCTGgtaagttctcatctgaactgttctcattcatgatt-catccaaggcagttgagaatttaattttagcattaaattgcacacacaactaaaattactctttgcctttctttgagatatttcgcttccaaatatcaatattctaatgaaaccaattaaattag

upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0021g00460.t01 (Vitis vinifera), 5'ss of exon 6
GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagt-ttgtttaaaactcttgatgtgtgagtgcaataatgatagtttgtctctgaccatataatcactttgattagtccctcaagacttgtgcatttgc-
|| |||||||||||||||||||| | ||| || || || |||||||| |||||||||||||| || |||||| ||| || | |   |       | ||| | |    |  |  |  ||||      |  || |||||   |  |    |       ||   || |||     
GTCATGAATTTGATTGGTGATGTTAAGGGTAAAGTGGCTGTTATGGTGGATGACATGATTGACACAGCTGgtgagtcttatatttgaactgcattttgttact-tttttttcttcttttgcaaacaaatat-taatcttctaaaaagatgatcttggaaaagtacatcaaat

upper sequence: GLYMA03G24280.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S123_105V6.1 (Physcomitrella patens), 5'ss of exon 6
GTGATGAATTTGATTGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgtttaa---aactcttgatgtgtgagtgcaataatgatagtttgtctctgaccatataatcactttgattagtccctcaagacttgtgcatttgc
||||||||  |||| || ||||| | ||||||||||||||||||| ||||||| |||||||| ||||||||||||  | |  |    || |||   |   | |  | | |  ||| |  |    | |||  | |       |   |||  |  |     | |      |    
GTGATGAACCTGATCGGAGATGTCAAGGGAAAGGTAGCAGTTATGCTTGATGATATGATTGACACTGCTGgtaagcctttccaccgtaattctatgttccttaaagaagt--tgagaaatgaattatgagaacacgtcttgtactattcattaccatgtattaccatgtaga-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208114373|gb|GD908484.1|GD908484
EST:     TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG                         GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
EST: gi|26268807|gb|CA819870.1|CA819870
EST:     TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG                         GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
EST: gi|193523356|gb|FK482711.1|FK482711
EST:     TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTG                         GGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG
genomic: TGTAAGGGGAAAGGTAGCAGTTATGGTTGATGACATGATTGATACTGCTGgtaagtttgt ... ttgtctttagGGACTATTGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAG