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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATGATACAGAGGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGCTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttggtttgacaaactattttgtttggatgaattgaacttgatttttatttccttcatttttctgagctac...

Basic information

species Glycine max
transcript GLYMA02G46250.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20800.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGATGATACAGAGGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGCTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttggtttgacaaactattttgtttggatgaattgaa---cttgatttttatttcc--ttcatttttctgagctac
||||||||||||||||| || || |||||||||||||| || |||||||| |||||||| || |  ||||||||||| |||||  |||||||||| |||||| |  | || |    ||| |    ||    || | |   ||  || |||   |   ||||    ||| |  ||  |||    | ||  ||| | ||    
GTTGATGATACAGAGGTCATTAGCTTCCTTCTTTCAACTGAAATTATTCCTCTGTGCCTCCGTACCATGGAAATGGGGAGTGAGCTGTCAAAAACAgtaagtcttttaatttaccgttacatt--ttcatgttcatatggtaccttctttaagtttcttgacagtcttaaaattcgttttagatgcacatttgttagt---

upper sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 8
GTTGATGATACAGAGGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGCTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatcttgttttaaaccaatttggtttgacaa-actattttgtttggatgaattgaacttgatttttatttccttcatttttctgagctac
|||||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||| ||||  ||||| ||||| ||||||||||||||||| ||||||   | ||| || |  |   | || ||     |     |||||||| | |   |   |    |   |   | ||||  ||         ||  |  
GTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCGCTGTGCCTACGCACCATGGAGATGGGGAGTGAATTGTCAAAAACAgtaagtgcccagattttataattctctaacttatgaagcttgtactattttctctcactacctgttgcaaaaacatcatttttttaggaagatagaaatg-

upper sequence: GLYMA02G46250.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S15_262V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTGATGATACAGAGGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGCTGTGCCTGCGCAGTATGGAAATGGGCAGTGAATTGTCAAAAACTgtaagtttactgatct--tgttttaaaccaatttggtttgacaaactattttgtttggatgaattgaacttgatttttatttccttcatttttctgagctac
|| ||||| || || ||||| | ||| || || ||||||||||||||||| ||||| || || | |||||||||||| |||||| | || || || || |||||      ||  || | | | |  | |   | |  || |    ||| ||   |  || |  |  || |       |   | | |  |  |  || |
GTGGATGACACTGAAGTTATTAATTTTCTACTCTCAACAGAGATTATTCCTCTGTGTCTACGAACTATGGAAATGGGGAGTGAACTTTCCAAGACCgtgagtttttcaccctgttgatatcatctcaatatctctcccataagtgtttattattacaaaataga--tggtcagatgcttaataactggttaggacttc