Sequence
atgc intronic sequence ATGC exonic sequenceTCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggcttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
Basic information
species | Glycine max |
transcript | GLYMA02G01930.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 6
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggcttatgccttatgttgttctgtattttcagtat-cattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
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ACTATTGAGTTTAAAGACATAATTAAAATTGGACGTACACATACCCAAGATGCCACCCCATTGACTCTTGGCCAAGAATTCAGTGGCTACACTACACAGgtaggatttatt--------ctagcatcttttgttgtcttatttattaactacgcagttaagattaacaggtaga-cttat---taactatttaagattctatgcag-------------------
upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 5
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggcttatgccttatgttgttctgtattttcagt-atcattg-atgttggatggtaatatcctgtgggtagt--gatttctcattagtcactactttttcctctatctacag
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TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGATGCTACACCTTTGACATTAGGACAAGAATTTGGTGGCTATGCTACTCAAgtaaat-------tatttg--ttctgttttctatccttatataacaaaagtgaaaattacatgtcattaagaaataacttataaatttttggatttcatgattgtag----------------------
upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 5'ss of exon 7
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggcttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
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TCCTTCGAGTTCAAAGATATTGTGAAAATTGGAAGAACTCACACTCAAGATGCTACACCTTTGACACTAGGACAAGAATTTGGTGGCTATGCTACTCAAgtaagtggttt--tgttcaga--aaactgtgtttgtctaacaaagttgaaaatcac--atacaatctggaactcacctgcag-------------------------------------------
upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 7
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagcc-ttcttatgtttggcttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
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TCTATTGAGTTCAAAGATATTATTAAAATTGGGCGTACTCACACTCAAGATGCAACGCCTTTGACTTTGGGCCAAGAGTTTAGTGGGTATTATACACAAgtaagttattcttgttacacttctaaaggttttgttgttt--tactgtcaagtggatttgttttggttgata-----ctgcaagc------ctgaaatttgttagtgcctttgttgcag-------
upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 6
lower sequence: PP1S49_154V6.1 (Physcomitrella patens), 5'ss of exon 6
TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggc-ttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
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CAAAATGATTTTAGCGACATTGTTAAGATTGGTCGCACTCATACTCAAGATGCTGTTCCACTCACCCTCGGACAAGTGTTTAGTGCATACTGCACACAGgtttaatcaaatctgctcatcgttttcttttacattttttttcaggttacggg--atttat-ttatttatttatttatttatttaaaaaaaattggaacagctctgacggcatcatgtga-tgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394627|gb|EV264498.1|EV264498EST: ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAA GTGAAGTACGGTATTGATAGAGTAATTGACACTTTGCCACGCATGTATCAG
genomic: ATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttc ... ctatctacagGTGAAGTACGGTATTGATAGAGTAATTGACACTTTGCCACGCATGTATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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TCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAgtaagccttcttatgtttggcttatgccttatgttgttctgtattttcagtatcattgatgttggatggtaatatcctgtgggtagtgatttctcattagtcactactttttcctctatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA