Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCACAGTTGCTGCTAGCTCAACAGATAGGGATTTCACCTCTGATATCACACTAGGAAATGGTGTTAACATCACGGTAAAGCTTGACCACTTTGTGTTGgtaaaccttttgtacacttggtggactcaatttagttctctataatgatacag

Basic information

species Glycine max
transcript GLYMA01G36000.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 6
------------------------TATCACAGTTGCTGCTAGCTCAACAGATAGGGATTTCACCTCTGATATCACACTAGGAAATGGTGTTAACATCACGGTAAAGCTTGACCACT--TTGTGTTGgtaaaccttt-tgtacacttggtggactcaatttagttctctataatgatacag
                         ||||| ||||| ||||| ||||||||||||||||| || |||||||||  | ||||| |||||| |||  ||||||||| |||    | ||  |  |||  ||| |  |     |  |  |   |  || ||   | ||||   | ||   | ||
TGCAACAAACCTTGCTCCATGGATGATCACTGTTGCCGCTAGTTCAACAGATAGGGATTTTACATCTGATATCGTATTAGGAGATGGTGCTAATTTCACGgtaatgctatttccctagtaatgtctgtagatttagacattaatcttaggctcttaaaacacttcttggttattgaatag