Sequence
atgc intronic sequence ATGC exonic sequenceGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttgtgttgatcaatctccttgaaatatgtaccctcttatctgaatcaaagcaatccagcttggccaaagaaagacacactttgcttccaaatg...
Basic information
species | Glycine max |
transcript | GLYMA01G01740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g13170.2 (Oryza sativa), 5'ss of exon 7
GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAA---TAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttgtgttgatcaatctccttgaaatatgtaccctcttatctgaatcaaagcaatccagcttggccaaagaaagacacactttgcttccaaatg
| ||||||||||| ||||| ||||||||||| |||||||| || || ||||||||||||||| | ||| |||| ||||||||| ||| | |||| ||| ||| | | || | || |||| | | | | || | | | ||| || ||| || ||
---CTAAAGGAAGTTTAGGTAGCTTGAATATGATTACAGGGAAGAACTCTACTGAACATGGTAAAACCTCTGGGGCATCAGCTAATGGAGCCATTTCTCAAAGgtttgtgcattgtcaccttagcc------aacaacaacaatcttgttt----tagaaacttcttgtgtcggtaaaagaatttctgcttctattgcag---
upper sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G32150.1 (Arabidopsis thaliana), 5'ss of exon 7
GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttgtgttgatca-atctccttgaaatatgtaccctcttatctgaatcaaagcaatccagcttggccaaagaaag-acacactttgcttccaaatg------------------------
||||||||||||| ||||| |||||||||||||| | ||| || || |||||| ||| |||| |||| |||| ||||||||| | ||| || ||| | ||| | | | || | | | || | | | ||| | ||| || |||| | || | | | | ||| || || ||
GATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAACAATGAAGCTGGAAAAAACTCAGGAGCATCAGCTAATGGAGCTTGTTCTAAAAGgcatgtgacttcatatttgtatgaacatcatattggcatgaatacttatgattgctagc--tctagctatgataatgttattggataattttgttgaaattgtctgatttgttctcggtttaacag
upper sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 7
GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtg---ttgtgttgatca-atctccttgaaatatgtaccctcttatc-tgaatcaaagcaatccagcttggccaaagaaagacacactttgcttccaaatg
||||||||||||||||||| |||||||||||| | ||||| || |||||||||| |||||||||| |||| |||||||||||||| | |||| || |||| || | | | | || || | | | |||| | || | | | || || || | | | |||| ||
GATCAAAAGGAAGTTTGGGCAGTTTGAATATGCTTACAGGCAAGAATAATGAACTTGGTAAAACATCAGGAGCATCTGCTAATGGAGTGTATTCTAAAAGgtgcgctggctaatatatagcagatgaatatcatagttgtatggttttgtagttagtccttgcctagtgcctggtttaggtgagtgggtttgttgcctct-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21255865|gb|BQ452753.1|BQ452753EST: GAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAG TGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAA
genomic: GAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttg ... ggatttgtagTGGTGAGAGTGCAAGTGAAGGCGAAGGTACTAGTGAAGGAAGTGATGCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAATAATGAACATGGTAAAACACCAGGGACATCTGCTAATGGAATTCATTCGAAGAGgtacgtgttgtgttgatcaatctccttgaaatatgtaccctcttatctgaatcaaagcaatccagcttggccaaagaaagacacactttgcttccaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA