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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgctgtctgcttgtctgactgaacttcattgcatcatttcag

Basic information

species Glycine max
transcript GLYMA19G45140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 5
TTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgctgtctgcttgtctgactgaacttcattgcatcatttcag
||||| ||||| || || ||||||||||| || || |||||||||||||||||| | || ||||| ||  |      |   ||||| | ||  | | |  ||| ||                 |||  ||  || |  ||||||  |   ||     ||   |||          
TTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcactgctgtt--tttttggtctttga-tgtatcatattattctccctgaattctatctcatgcaattcgatctgctgtttccacctttttttgatgc----------

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 5
TTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgtta-tgctgtctgcttgtctgactgaacttcattgcatcatttcag
||||| |||||||||||||| |||||||| || || || || || ||||| |||||||||||||| ||| ||          |  | | ||| ||||    || |  |      |    | ||| || || |  | || | ||||    | | |    |   ||| ||        
TTTGTTGTTGGGCTGGGTGACAAAGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTTGGgtaggtttcatattcatctctccgtttttacaataa---atttccact----accatgcattttaatgctgctcctttgtgctgtaataatttttatattttggatt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411562|gb|EV281373.1|EV281373
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|18040702|gb|BM308996.1|BM308996
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|207714809|gb|GD695027.1|GD695027
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAAACAAAATATCAGAT
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAA-CAAA-TATCAGAT
EST: gi|254338828|gb|GR847545.1|GR847545
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|151410157|gb|EV279965.1|EV279965
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|151406841|gb|EV276656.1|EV276656
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|254320308|gb|GR831116.1|GR831116
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
EST: gi|207819475|gb|GD791215.1|GD791215
EST:     CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGG                         GGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA
genomic: CTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttcca ... atcatttcagGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGA