1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAACTAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatgggagaagtttattagatccccaaaccatgcaattaatgactttttcatgcatgcattaacgttttttttaatacctttatgcag
species | Glycine max |
transcript | GLYMA19G32600.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|51341156|gb|CO982473.1|CO982473
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|151403622|gb|EV273432.1|EV273432
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAGTTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|254314306|gb|GR824547.1|GR824547
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCCEST: gi|254320647|gb|GR827096.1|GR827096
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: AAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|209703009|gb|BW670146.1|BW670146
genomic: AAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: TGTTGGACTTGGCAGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|254341127|gb|GR854855.1|GR854855
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|213593532|gb|DB977364.1|DB977364
genomic: TGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: CAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAEST: gi|15000621|gb|BI321435.1|BI321435
genomic: CAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
EST: ATCTTCAGAAAGAATTCAAG ACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
genomic: ATCTTCAGAAAGAATTCAAGgtattcaatg ... ctttatgcagACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACTAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGgtattcaatgggagaagtttattagatccccaaaccatgcaattaatgactttttcatgcatgcattaacgttttttttaatacctttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA