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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCACTGCAAGCCTATATCCTCTTCAACGCCGATGGCCCTAATGCCAGTGATCAGgtgtaaatttcctctaaaatccatttatcagttacactgctagtattcttgcctgcttcaagcataatatag

Basic information

species Glycine max
transcript GLYMA18G51690.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51690.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 14
--CTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCACTGCAAGCCTATATCCTCTTCAACGCCGATGGCCCTAATGCCAGTGATCAGgtgtaaatttcctctaaaa-tccatttatcagttacactgctagtattcttgcctgc-----ttcaagcataatatag----------------------
  |||| |||||||||||||| || || || |||||||||||||| |||| ||||   || |||  || ||| |  | ||||| ||||||||  | |||||||| | |  || ||||     ||  | | ||  |  | ||     | |  |||          || |||||  | ||                        
AGCTCTTATTGCTCACTTCCAGAACTCCAGTTTGATGAATGAGGACAAGCGCTGCCGCCCCATA--CTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctttctctctctctctctctctctctctctctctctctctcgttgataaatggagttaaagcagcagatgacacttggacacagtttgctgtt

upper sequence: GLYMA18G51690.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0239g00110.t01 (Vitis vinifera), 5'ss of exon 4
--CTCTCATTGCTCACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCACTGCAAGCCTATATCCTCTTCAACGCCGATGGCCCTAATGCCAGTGATCAGgtgtaa-atttcctctaaaatccatttatcagttacactgctagtattcttgcctgcttcaagcat-aatatag--------------------------
  |||| | |||||| |||||||| || |||||||||||||||||||| || |||   |||||   || ||  |  |  |||| || |||||  ||||||||||   | || |    |||| |   ||    | ||          ||| ||     |     |  || ||| ||                           
TGCTCTTACTGCTCATTTCCAAAACTCGAGCTTGATGAATGAGGATAAACATTGCCGCCCTAT--TCTATTTCATACTAATGGTCCAAATGCAGGTGATCAGgtaggacatctgacataaagtatgttctctattttgttattctttatactaattggtaatgactattaatgtatgattacttgtatacctttccttgata