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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGgtaaactttgaagtttttgaggaaaaaaatgagcaatcccttaaatgtcatgtttgtgacatgcttaatttgttacatctag

Basic information

species Glycine max
transcript GLYMA18G22930.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G22930.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g04330.t01 (Vitis vinifera), 5'ss of exon 4
GTGATGGCATTGCTTCAACAAGGAAATCGGAGCAGAACCACAGAACCAACTCGTGCAAACGAAACATCTTCACGCTCCCATGCTATTTTGCAGgtaaactttgaagtttttgaggaaaaaaatga--gcaatccc--tta-aatgtcatgtttgtgacatgcttaatttgttacatctag-----------------
|||||||||||||||||||||||||| |  | |||||| || |||||||| ||||  || ||||| |||||||| |||||||||||| |||||||    | |||   ||  ||       | |    | ||| ||  ||| ||| | |||||  ||| ||  ||||||||||  ||   |                 
GTGATGGCATTGCTTCAACAAGGAAACCTAAACAGAACTACTGAACCAACCCGTGTCAATGAAACTTCTTCACGGTCCCATGCTATTCTGCAGgtgc-ttatgagacttaagaccttgttatttcctgtaattccaattataattttatgttc-tga-atttttaatttgttttattctgtgatactttttcctcag