1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCAACACTTGTTTTTGAAGTTGAGCTAGTTGCCTGTCGGCCAAGGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAGtaagtaacagatttaatattttaccaaatttatgtgcttctgcacctgtcctaaactaaagttggaagtggaatatcagaatttcgtgttgctttggatgtctctttttttattggaaagcaataataatatatatatatatatataatgtcctgtcatgaaaaatagt
species | Glycine max |
transcript | GLYMA18G04170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAT GAACTGAAGAAGCAGAGAGAGCTAGCTGEST: gi|298169599|gb|HO020959.1|HO020959
genomic: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAGtaagtaacag ... gaaaaatagtGAACTGAAGAAGCAGAGAGAGCTAGCTG
EST: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAT GAACTGAAGAAGCAGAGAGAGCTAGCTGCTGCTGCCAAAGAGEST: gi|298169647|gb|HO021007.1|HO021007
genomic: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAGtaagtaacag ... gaaaaatagtGAACTGAAGAAGCAGAGAGAGCTAGCTGCTGCTGCCAAAGAG
EST: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAT GAACTGAAGAAGCAGAGA
genomic: GGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAGtaagtaacag ... gaaaaatagtGAACTGAAGAAGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACACTTGTTTTTGAAGTTGAGCTAGTTGCCTGTCGGCCAAGGAAGGGCTCCAGTTTGGGAAGTGTTTCAGAGGAGAGGGCTAGGCTTGAGtaagtaacagatttaatattttaccaaatttatgtgcttctgcacctgtcctaaactaaagttggaagtggaatatcagaatttcgtgttgctttggatgtctctttttttattggaaagcaataataatatatatatatatatataatgtcctgtcatgaaaaatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG