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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttttctggataactattgatggttgaagattttacttatgtttctgatggaattcccaacaatgattgacatggatt...

Basic information

species Glycine max
transcript GLYMA17G16420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttttctggataacta-----ttgatggttgaagattttacttatgtttctgatggaattcccaacaatgattgacatggatt
||||| ||  |||||| |||||| |||||||| || ||| ||||||| |||||||| || || || |||||||||||||||||||| ||||| || ||||||| |||  |||      || ||  |  | ||  || |     || ||  |||||||||  | || | |   |  |    ||  ||                   
GATCCTCGTCTATCTACTTTTGGTCTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCTGAGTTTTTACGGACAGgtaaaattcttgatcttgtgaatcgtagtcgaagacaaaccaattcattattgaagattaaagttctctggtttttct--tttgcag------------------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0012g01140.t01 (Vitis vinifera), 5'ss of exon 5
GATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatt--------tgccaacatgtatttttctggataacta---ttgatggttgaagattttacttatgtttctgatggaattcccaacaatgattgacatggatt
|| || || ||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| || |||||||||||||||| | ||          |  |||||| |||  ||| |||||| |    ||| |  || ||  ||||   |  | |||| ||  | ||          |            
GACCCTCGTTTATCAAGTTTTGGCCTTATGAAAAATAGTCGAGATGGTAAAAGCTACAGTACAAACTTGGCTTATACTCCACCAGAGTTTTTGCGAACAGgtacactacactgaaacattacaacatatatcattcaggataaattgacttggttattaaattttttttgtcggcttctaatttacttatttgttccaag-----------

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtat-----aatatttgccaacatgtatt---tttctggataactattgatggttgaagattttacttatgtttctgatggaattcccaacaatgattgacatggatt--------------------------------------
|| || ||  | ||  |||||||||| ||||| || ||  ||||||||||||||||||| || ||| | ||||| ||||| ||||| |  ||  ||||||||||       | |    |    || ||    | | ||   |||   ||    ||    ||||   |||||||    ||| |       | ||||  || ||||  |                                       
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAAGAACAGgtatcccacggtttccctctttctggatcgaatatttgagcaacc--tggaaattagcaatttctattatgtta--aatgtatgcatgcataatgtatg-catgcttctctttggtacgtgacaaatgtcataagagggtttgcag

upper sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S9_348V6.1 (Physcomitrella patens), 5'ss of exon 5
GATCCCCGCTTATCTAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGgtataatatttgccaacatgtatttttctggataactattgatggttgaagattttacttatgtttctgatggaattcccaacaatgattgacatggatt-----------------------------------------------------------------------------
|| || ||  | ||  |||||||||| ||||| || ||  ||||||| ||||||||||| || ||||| ||||| ||||| ||||| |  ||| |||||||| ||| |  |         |  || |  | | | ||  ||| ||         |||  ||| ||| ||      |||  || |  |||   ||  |  |                                                                             
GACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGAAAAAGCTACAGCACCAATTTGGCTTACACTCCTCCTGAGTACTTGAGAACAGgt-taacaactttttgggcat-cttctgggaagagcttgtgagggaatggtgggttagctatatttttgtc----ttcgtaagatcgatgttcactgcctaagtcaatcggtcgaggaaccctggaactcccgtgattctgtttggtcagtgacggtcatttttcgatattttgcag