Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgctagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttttgaaataccattttccatttacaagagggtcgaattactgaactttgtgcag

Basic information

species Glycine max
transcript GLYMA17G05130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05130.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g01930.1 (Oryza sativa), 5'ss of exon 6
GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgctagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttttgaaataccattttccatttacaagagggtcgaattactgaactttgtgcag
||||||||||||| ||  ||||||||||||| || ||||| ||||| ||||||     |||   | |   ||  | |  |   || || | ||  |||      ||| || |     |  || || |  |||| ||||     ||                         
GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgct-ctatataaccattcctttttttattatttttcatgctattgtagagattgaagtgccact--aactagccatttcaattttgtccag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231340|gb|BE800228.1|BE800228
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|192322757|gb|FK014448.1|FK014448
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|254345030|gb|GR855687.1|GR855687
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|6070770|gb|AW100157.1|AW100157
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|298179386|gb|HO027857.1|HO027857
EST:     GAGCATGTGAAGGATCGATTGCGTGCTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
EST: gi|14259415|gb|BG882323.1|BG882323
EST:     GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATG                         GACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC
genomic: GAGCATGTGAAGGATCGATTGCGTGTTCAACTTGCCATGTTATAGTCATGgtacatcgct ... ctttgtgcagGACGTAGAACAATACAACAAATTGGAAGATCCAACTGATGAGGAAAATGAC