1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGAAGGAAGACCCAGTTAAGGAGATTTTTCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAGgtttacctttggcaggattctgttttatgattttactcagagatatcttctgtaatttatttctattttaattctgatgtttccccaatcattatag
species | Glycine max |
transcript | GLYMA16G15580.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGTGTCAGGGGCATCAG ATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGAAATCAAEST: gi|9565017|gb|BE474526.1|BE474526
genomic: GGGTGTCAGGGGCATCAGgtttaccttt ... atcattatagATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGGAATCAA
EST: TCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAG ATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGGAATCAAEST: gi|8283377|gb|BE020938.1|BE020938
genomic: TCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAGgtttaccttt ... atcattatagATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGGAATCAA
EST: AGTTAAGGAGATTTTTCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAG ATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGGAATCAA
genomic: AGTTAAGGAGATTTTTCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAGgtttaccttt ... atcattatagATTTCACTTTAGGAAATGCATCTGCATCTGATTATGTGGACCTGGAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGGAAGACCCAGTTAAGGAGATTTTTCCAGAGGTGTCGCAATGGGTGTCAGGGGCATCAGgtttacctttggcaggattctgttttatgattttactcagagatatcttctgtaatttatttctattttaattctgatgtttccccaatcattatag
- - - - - - - - - AAGGAG
- - - - - - - - - AGGAGA
- - - - - - - - - - GGAGAT