Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttattatgttgataatggtagtaatgctctacccagcattcattctagttagtaaaatttatgttttcatgaaccaccagattagtctcccgtgt...

Basic information

species Glycine max
transcript GLYMA16G10750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10750.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G115757_T02 (Zea mays), 5'ss of exon 5
GACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgta-atttattatgttgataatggtagtaatgctctacccagcattcattctagttagtaaaatttatgttttcatgaaccaccagattagtctcccgtgt
|| |||||  |  ||||||||||  ||||||| ||||| ||| |||| || |||||||| |||||||||||    || || || ||||| |||||||| ||||  ||| |||| |  ||  |  |  |  |  |||    ||||| || |   | |||| | ||||   || |    |||   | |    |     | |  
GATCAGGGTCTCCTGGGAATGTGCGTTGGTGAAAAGCGGAAGTTGAAGATCCCATCAAAGCTTGGCTATGGGCCTCAAGGCTCGCCACCTACTATTCCTGgtatgttttttatatatattttc-tgctctttgtcttttgagcatacagttgcgatagtcacatttggattattcaaaacactctgtgagggtaatcatca

upper sequence: GLYMA16G10750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 5'ss of exon 5
GACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttattatgttgataatggta-gtaatgctctacccagcattcattctagttagtaaaatttatgttttcatgaaccaccagattagtctcccgtgt
||||| ||||| ||||| |||||| | ||||||||||| ||||||||||||||  |||||||||| ||||| |  ||||| || || || |  || |||||||  || || | ||  |  || || ||||    | |   |   ||  ||  | ||  ||   | ||  |  ||  |    |  |  |      |   |||
GACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGATCCCAGgtaccttttttttttttttttgataagtaagatcccaggtactttttgtttcacttcttatgctata-atcctctagttagaataactgcaatgcatttgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312663|gb|BG406314.1|BG406314
EST:     CCCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: CC-ATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298193329|gb|HO033763.1|HO033763
EST:     GCCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208276591|gb|GE079099.1|GE079099
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|27423853|gb|CA935373.1|CA935373
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298175734|gb|HO018331.1|HO018331
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|24135582|gb|BU926092.1|BU926092
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|27427266|gb|CA938786.1|CA938786
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192324946|gb|FK016117.1|FK016117
EST:     CCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: CCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCC-ACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192297771|gb|FG989977.1|FG989977
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193527054|gb|FK484566.1|FK484566
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|26267833|gb|CA818896.1|CA818896
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298198249|gb|HO039788.1|HO039788
EST:     ACCATCAAAACTTGGCTACGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298170036|gb|HO018660.1|HO018660
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192315333|gb|FK009625.1|FK009625
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193712579|gb|FK649686.1|FK649686
EST:     CCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATACTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: CCATCAAAACTTGGCTATGGAGAGCAGGGTT-CCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|14011654|gb|BG726576.1|BG726576
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208316505|gb|GE113615.1|GE113615
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGAACAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGA-CAAA
EST: gi|151407606|gb|EV277421.1|EV277421
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298187400|gb|HO034549.1|HO034549
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192327623|gb|FK020656.1|FK020656
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|209726138|gb|BW675313.1|BW675313
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|6747607|gb|AW318120.1|AW318120
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207697931|gb|GD680100.1|GD680100
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGGGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|6847379|gb|AW349669.1|AW349669
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207708312|gb|GD690442.1|GD690442
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|22526013|gb|BU084824.1|BU084824
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31461364|gb|CD403392.1|CD403392
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193490745|gb|FK456444.1|FK456444
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|7146975|gb|AW508897.1|AW508897
EST:     ACCATCAAAACTTGGCTATGGAGAGCAAGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|12774035|gb|BG238962.1|BG238962
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|209700346|gb|BW664383.1|BW664383
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|38192531|gb|CF921737.1|CF921737
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GGGGTGCTACACTCATATTTGACGTTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298162996|gb|HO011729.1|HO011729
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193404074|gb|FK366520.1|FK366520
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|214005513|gb|DB989203.1|DB989203
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192304037|gb|FG993881.1|FG993881
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|209700345|gb|BW664382.1|BW664382
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|209726139|gb|BW675314.1|BW675314
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|10845833|gb|BF068875.1|BF068875
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193304866|gb|FK270853.1|FK270853
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|27423836|gb|CA935356.1|CA935356
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGAGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|15203525|gb|BI426293.1|BI426293
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|207690133|gb|GD671518.1|GD671518
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGGGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|13788814|gb|BG651405.1|BG651405
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208031734|gb|GD831242.1|GD831242
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTGTTCCAG                         GTGGTGCTACACTCATATTTGACG
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACG
EST: gi|7589192|gb|AW704971.1|AW704971
EST:     ACCATGAGAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATAGT-GAACGCTGAGCGTGTGAGAGTGA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGA-CGCTGAGCTTGTGGGAGTGA
EST: gi|11413630|gb|BF425641.1|BF425641
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACACAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208060845|gb|GD858755.1|GD858755
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193364499|gb|FK333540.1|FK333540
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|14990944|gb|BI316617.1|BI316617
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGGGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|17402092|gb|BM178874.1|BM178874
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208087768|gb|GD887690.1|GD887690
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|208067090|gb|GD861300.1|GD861300
EST:     CTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: CTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|9899664|gb|BE608632.1|BE608632
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAGAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|31475040|gb|CD417068.1|CD417068
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|151402182|gb|EV271995.1|EV271995
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298185920|gb|HO031081.1|HO031081
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192325979|gb|FK016656.1|FK016656
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|298166273|gb|HO009244.1|HO009244
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|9902932|gb|BE611900.1|BE611900
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193334896|gb|FK300926.1|FK300926
EST:     GGCTATGGAGAGTCAGGGTTCCCCACCCACTATTTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAA
genomic: GGCTATGGAGAG-CAGGGTTCCCCACCCACTA-TTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAA
EST: gi|20498677|gb|BQ273607.1|BQ273607
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|38193858|gb|CF923064.1|CF923064
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|193349474|gb|FK318592.1|FK318592
EST:     AAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGAC-AAA
genomic: AAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|5509520|gb|AI856078.1|AI856078
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|254347228|gb|GR856898.1|GR856898
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|7692067|gb|AW760182.1|AW760182
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|9901330|gb|BE610298.1|BE610298
EST:     GCCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTACAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACA
EST: gi|7284332|gb|AW596925.1|AW596925
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|14195946|gb|BE657760.2|BE657760
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATT-GACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|13481192|gb|BG510535.1|BG510535
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGGGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192295117|gb|FG986836.1|FG986836
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|192328912|gb|FK019667.1|FK019667
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|42722852|gb|CK768751.1|CK768751
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
EST: gi|13181466|gb|BG352806.1|BG352806
EST:     ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAG                         GTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA
genomic: ACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttatt ... taacttacagGTGGTGCTACACTCATATTTGACGCTGAGCTTGTGGGAGTGAACGACAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGTAAGCTGAAAATACCATCAAAACTTGGCTATGGAGAGCAGGGTTCCCCACCCACTATTCCAGgtaatttattatgttgataatggtagtaatgctctacccagcattcattctagttagtaaaatttatgttttcatgaaccaccagattagtctcccgtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG