Sequence
atgc intronic sequence ATGC exonic sequenceGTCATTTTTGTCCTGCTTTTTCCAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAATgtaagtattctacagaatttggatcctgatggtataactttgtttttttgttcctttttttactgagaaggatatgactagtaatcttaaatatacttcttttgttcaattttttatgcatttttttatatatttttatag
Basic information
species | Glycine max |
transcript | GLYMA16G10730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G10730.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G48570.1 (Arabidopsis thaliana), 5'ss of exon 5
GTCATTTTTGTCCTGCTTTTTCCAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAATgtaagtattctacagaatttggatcctgatggtataactttgtttttttgttcctttttttactgagaaggatatgactagtaatcttaaatatacttcttttgttcaattttttatgcatttttttatatatttttatag
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GCCATTTCTGTCCTGCGCTTTCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTGACTGTGAAGCCACAATgtgagtattttatttggtgtttgtccttat---ttagcgatgaatcagtgaatttagattgatgtgtgacactctgacttgtacag-------------------------------------------------------
upper sequence: GLYMA16G10730.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0769g00010.t01 (Vitis vinifera), 5'ss of exon 5
GTCATTTTTGTCCTGCTTTTTCCAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAATgtaagtattctacagaatttggatcctgatgg-tataactttgtttttttgttcctttttttactgagaaggatatgactagtaatcttaaatatacttctt--ttgttcaattttttatgcatttttttatatatttttatag
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ATTATTTCTGTCCTGCCCTGTCCAAGGCTGTGAAGACAATGAAGAAAGGAGAAAAGGTTATTTTGACAGTGAAGCCACAATgtaagt-------------tgttttatgatggatgtatttttagacttgaaacaatcctattgttaggg----------tgataacattgatgatgcttcttggttcttctatacccctaataacttttggtg-gtgcctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7684632|gb|AW755280.1|AW755280EST: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAAT ATGGATTTGGTGAGAAGGGTAAGCCAGCGCATGGTGATGAAGGTGCAGTTC
genomic: TAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAATgtaagtattc ... atttttatagATGGATTTGGTGAGAAGGGTAAGCCAGCGCATGGTGATGAAGGTGCAGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCATTTTTGTCCTGCTTTTTCCAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTGAAGCCACAATgtaagtattctacagaatttggatcctgatggtataactttgtttttttgttcctttttttactgagaaggatatgactagtaatcttaaatatacttcttttgttcaattttttatgcatttttttatatatttttatag
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC