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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCAGAGGAGGATGCTAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAGgtttgtgctttaaatcatcatccatataataatttgtagtgataacatctagttctttttttaatatcatgaggattaattatataagaatatcaataatgttgattctttttttggaatttgcttttacag

Basic information

species Glycine max
transcript GLYMA16G02340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G46700.1 (Arabidopsis thaliana), 5'ss of exon 4
GTATTCAGAGGAGGATGCTAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAGgtttgtgcttt---aaatcatcatccatataataatttgtagtgataacatctagttctttttttaata-tcatgaggattaattatataagaatatcaataatgttgattctttttttggaatttgcttttacag
 ||  | ||||| ||||| ||||  || ||  | || || ||||  || ||| | ||||||||||| ||||| ||||| |||||||||||||| || ||||| |||  ||    | |  |   ||| |||    |  |  |||   |  |   |  || ||  | || | || ||     |  ||  | |                                              
ATACCCGGAGGATGATGCAAAGGCGATTGTCGTACAAATTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGTGACTTAAAGCCAGAGgtctgtttttacaaagaaaactttccctatctctacctccagtagcattacaca--tcattactaaacactcctgttaccttgttcaacag---------------------------------------------

upper sequence: GLYMA16G02340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 4
GTATTCAGAGGAGGATGCTAAGGTTATAGTTTTGCAGATCCTAAGCGTAGTTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAGgtttgtgctttaaatcatcatccatat-aataatttgtagtgataacatctagttctttttttaatatca------------------tgaggattaattatataagaatat--caataat-gttgattctttttttggaatttgcttttacag
 ||  | || || ||||| || |  || ||| | || ||| ||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||| | ||||    | | ||  || |  || |  |||      |  ||||  |||  ||||| | |  |                  | | | |||||| | | |  ||||   ||||||   |||| || |||        |  |   ||||
ATACACTGAAGAAGATGCAAAAGCAATTGTTGTACAAATCTTAAGCGTTGTTGCATTTTGTCATCTTCAAGGCGTTGTGCACCGTGACTTAAAGCCAGAGgtttcttcttttg--cttgattaatgttgatgaactgtgaccg-actatcttattccctttttgaaagaagtgctgctttctttccttttacgtttaattctctcaccatatagtaataattactgatactctttcctcctcgttgtcgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400987|gb|EV270801.1|EV270801
EST:     TTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAG                         AATTTCCTCTACACTTCCAGAAGTGAAGATGCTGACATGAAGTTGATTGAT
genomic: TTGCTTTTTGTCATCTTCAAGGTGTTGTACACCGTGACTTAAAACCTGAGgtttgtgctt ... gcttttacagAATTTCCTCTACACTTCCAGAAGTGAAGATGCTGACATGAAGTTGATTGAT