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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTCTGAAACCATGGAGGAAATCCTTGGAAGGATACATCACAGGGAAGAAGCAGCAGTTAAGCGCGAAAGAGCCATGGCATATGCTTTTTCCCATCAGgtaggttagttagtgttgggaatgtctcaatatctgtttcacctgatcctactgataatcacatacatatcttatgaatcatactag

Basic information

species Glycine max
transcript GLYMA15G08660.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g06160.2 (Oryza sativa), 5'ss of exon 5
TGGTTCTGAAACCATGGAGGAAATCCTTGGAAGGATACATCACAGGGAAGAAGCAGCAGTTAAGCGCGAAAGAGCCATGGCATATGCTTTTTCCCATCAGgtaggttagttagtgttgggaatgtctcaatatctgtttcacctgatcctactgataatcacatacatatcttatga-atcatactag--------------
 || || || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| ||||| ||| |||| ||||||||||| ||    |||||||||   ||   | || |     |||  |||  ||  |      | || |   | | |    | ||| |||   |  | || |||                  
AGGCTCGGATACTATGGAGGAAATACTTGGGAGGATCCAACAAAGGGAAGAAGCCGCAGTAAAGCGTGAACGAGCTATGGCATATGCATTCAATCATCAGgta--ctaacaattgattcaggtgttacaacttcattcattgttcattcctttaaaagaatcctacgtattgcagcacattatatctatgattttgatctta

upper sequence: GLYMA15G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G33990.1 (Arabidopsis thaliana), 5'ss of exon 5
TGGTTCTGAAACCATGGAGGAAATCCTTGGAAGGATACATCACAGGGAAGAAGCAGCAGTTAAGCGCGAAAGAGCCATGGCATATGCTTTTTCCCATCAGgtaggttagttagtgttgggaatgtctcaatatctgtttcacctgatcctactgataatcacatacatatcttatgaatcatactag
||| || || || |  || |||||| | |  ||||||| ||| |||||||||||  |  ||||||| ||||||||| ||||||||||||| || |||||||||  |    ||     |  | |   |   | | || | |   ||||   |  ||  |  |  |  |   |||     |  ||  ||
TGGGTCAGAGACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAAAGAGCCTTGGCATATGCTTTCTCTCATCAGgta--tagaataaaaaagccatttctttcttgtttgctgcttttgatatga--gaagaaaagttttaatccttgacctttttaacag

upper sequence: GLYMA15G08660.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g00860.t01 (Vitis vinifera), 5'ss of exon 5
TGGTTCTGAAACCATGGAGGAAATCCTTGGAAGGATACATCACAGGGAAGAAGCAGCAGTTAAGCGCGAAAGAGCCATGGCATATGCTTTTTCCCATCAGgtaggttagttagtgttgggaatgtctcaatatctgt--------ttcacctgatcctactgataatcacatacatatcttatgaatcatactag
 ||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||| ||||| ||  ||||  |||||||||| || || ||||||||  || |  |     ||| ||  | |   | | |||         | ||| | ||  |  || ||  ||| |   | ||||| | |   |    
AGGTCCTGAAACAATGGAGGAAATTCTTGCAAGGATATATCACAGGGAAGAAGCAGCAGTAAAGCGGGAGCGAGCACTGGCATATGCCTTCTCTCATCAGgtgtgtgaaatgtgaatggcaaaatttggttttttgtgacttttgctaaccaggtcaaatggaaaactaca-attgaacttattatttgcag---