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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaaatgttaccataatgatgaaattttcatccgctatcttcatttgttctattagaaaactttgatgtaaactttgtattagtgaacatcatt...

Basic information

species Glycine max
transcript GLYMA15G05630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05630.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ22493 (Selaginella moellendorffii), 5'ss of exon 4
GGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaaatgttaccataatgatgaaattttcatccgctatcttcatttgttctattagaaaactttgatgtaaactttgtattagtgaacatcatt
 || || || | ||| |||||   ||| || || || ||| | ||||||||||| |||||||| ||| | || || ||||||||||| ||||||||   |||| |  | |       |||  |  |    || | |  ||| |      ||| |||| ||      ||||   |                          
TGTAATTAAAACACTGGAAGACTGTGGCTTCTCCCAGGACCGCTTCTACATCCACTGTGATGGTGCTCTCTTCGGGCTCATGATGCCGTTCGTGAAGAGAgtaagctccacaaagttcatgttcttcgtgttcttaagcgcaaggcgtgttttttctctt------ctttccag--------------------------

upper sequence: GLYMA15G05630.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ11717 (Selaginella moellendorffii), 5'ss of exon 4
GGTCATAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGATTCTACATCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaaatgttaccataatgatgaaattttcatccgctatcttcatttgttctattagaaaactttgatgtaaactttgtattagtgaacatcatt
 || || |  | ||| |||||   ||| || || || ||| | ||||||||||| |||||||| ||| | || || ||||||||||| ||||||||   |||| |  | |       | |  |  |    || | |  ||| |      ||| |||| ||      ||||   |                          
TGTGATTAGAACACTGGAAGACTGTGGCTTCTCCCAGGACCGCTTCTACATCCACTGTGATGGTGCTCTCTTCGGGCTCATGATGCCGTTCGTGAAGAGAgtaagctccacaaagttcgtgttcttcgtgttcttaagcgcaaggcgtgttttttctctt------ctttccag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298176182|gb|HO015587.1|HO015587
EST:     TGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|17022958|gb|BM093992.1|BM093992
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAG
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAG
EST: gi|27423770|gb|CA935290.1|CA935290
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|14989994|gb|BI315667.1|BI315667
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|26058766|gb|CA801680.1|CA801680
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|24206063|gb|BU965316.1|BU965316
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|192294052|gb|FG987221.1|FG987221
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|193574699|gb|FK532610.1|FK532610
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|193544577|gb|FK500732.1|FK500732
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACGA                         GCTCCAAAAGTTACTTTTAAGAAGCCTGTTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|6666146|gb|AW277605.1|AW277605
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|298173832|gb|HO017168.1|HO017168
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|193382750|gb|FK347669.1|FK347669
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|24205487|gb|BU964740.1|BU964740
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|208274159|gb|GE073293.1|GE073293
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
EST: gi|7146009|gb|AW507931.1|AW507931
EST:     TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTA                         GCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC
genomic: TCCATTGTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTCGTGAAACTAgtatgtgcaa ... ttgctttcagGCTCCAAAAGTTACTTTTAAGAAGCCTATTGGCAGTGTTAGTGTTTCTGGC