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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAGTATCATAGAGATACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAGgtcagtatttttgtgcttgctttgttctattaagttattttatttaacagatgtggtttgtatgcaatagtgattttccaaatatggatgttgctgtgcag

Basic information

species Glycine max
transcript GLYMA14G11780.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11780.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G25100.1 (Arabidopsis thaliana), 5'ss of exon 5
AGTATTTTATTCACAACCATTTGGCTTTTACTGTCAAGTATCATAGAGATACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAGgt-cagtatttttgtgcttgctttgttctattaagttattttatttaacagatgtggtttgtatgcaatagtgattttccaaatatggatgttgctgtgcag
|||||||||| ||||| || ||||| || ||||||  |||||||||||||| || ||| ||  |||| || |||||||| |||||||| ||  ||| ||||| || | ||| |   |    |    |||    |  |  | |||||  ||||  |      |||   ||| |   |||  |                     
AGTATTTTATGCACAATCACTTGGCATTCACTGTCCGGTATCATAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAACCATACAGgtgcaatttttgttaacagattggactcttgggatctcctctattttgcagaactaa---atattttatacttgatttgtag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716722|gb|BW654317.1|BW654317
EST:     ACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAG                         TGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTG
genomic: ACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAGgtcagtattt ... tgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTG