Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattctgtttatctttatactcttactcctaattgtattgtcatctttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgtttcctgcttccacag
Basic information
species | Glycine max |
transcript | GLYMA14G07830.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G07830.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
GCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattctgtttatctttatactcttactcctaattgtattgtcatctttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgttt---cctgcttccacag
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GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtcta-tagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag--
upper sequence: GLYMA14G07830.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G75380.3 (Arabidopsis thaliana), 5'ss of exon 5
GCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattct--gtttatctttatactcttactcctaattgtattgtcatctttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgtttcctgcttccacag
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GCAAGACCAACCATGTATCAAGTGGTGAAGGAAATGGTGGACAAGATGGGTTACGAAgtatgtttcgtggtttcagtttctgctcttttatttaa--atatccttgtctcgtgaagatt-gtgtttcatgaaaattttctgaactattctacag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19348183|gb|BM892715.1|BM892715EST: CTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAA GTCAAATTTGTCAGAGTAACCAGGAGAGTTCATGAGGCATACTTTGCTCAG
genomic: CTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattct ... gcttccacagGTCAAATTTGTCAGAGTAACCAGGAGAGTTCATGAGGCATACTTTGCTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattctgtttatctttatactcttactcctaattgtattgtcatctttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgtttcctgcttccacag
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - AAGATG