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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttttatctctaaatatctctgaatatactattaataaattctaatgaagtttctattctttatgccatgatataccgccttttaagtagtttc...

Basic information

species Glycine max
transcript GLYMA13G44910.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315478|gb|FK007796.1|FK007796
EST:     ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAA                         TGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
genomic: ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttt ... atttttgcagTGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
EST: gi|298173138|gb|HO020122.1|HO020122
EST:     ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAA                         TGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
genomic: ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttt ... atttttgcagTGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
EST: gi|192315477|gb|FK007795.1|FK007795
EST:     ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAA                         TGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
genomic: ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttt ... atttttgcagTGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
EST: gi|298191541|gb|HO039020.1|HO039020
EST:     ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAA                         TGTGACTACAAATACTTATGGTCAGGCGGCTTC
genomic: ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttt ... atttttgcagTGTGACTACAAATACTTATGGTCAGGCGGCTTC
EST: gi|192307602|gb|FG999641.1|FG999641
EST:     ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAA                         TGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG
genomic: ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttt ... atttttgcagTGTGACTACAAATACTTATGGTCAGGCGGCTTCAAATTTAGTTGCTGGTAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAAgtatgacttttatctctaaatatctctgaatatactattaataaattctaatgaagtttctattctttatgccatgatataccgccttttaagtagtttc

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