1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaatcactctttttattttagtaggttgagttataccttttctgttttattttttaattaaaatttacatactttgattgaattatttttcct...
species | Glycine max |
transcript | GLYMA13G34860.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAG CATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAAEST: gi|58020018|gb|CX706760.1|CX706760
genomic: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaa ... attgatgcagCATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAA
EST: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAG CATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAAEST: gi|193594871|gb|FK546338.1|FK546338
genomic: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaa ... attgatgcagCATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAA
EST: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAG CATGGAGTGCAGGCACATTTATAGAAAAGAAAGTAATAATGCAATATTTGAEST: gi|151410568|gb|EV280383.1|EV280383
genomic: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaa ... attgatgcagCATGGAGTGCAGGCACATTTAT-GAAAAGAAAGTAATAATGCAATATTTGA
EST: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAG CATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAA
genomic: TGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaa ... attgatgcagCATGGAGTGCAGGCACATTTATGAAAAGAAAGTAATAATGCAATATTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGATATTGTAATGACCAGTATCCAGTCCAACATTTTGAATATTACCTGTCCATTGAGTGGAAAACCTGTTACTGAGCTTGCAGAACCAGTTCGCAGgtaacattaatcactctttttattttagtaggttgagttataccttttctgttttattttttaattaaaatttacatactttgattgaattatttttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT