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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATTCCTTCAAGTGGTCAAAAGgtaatgtgcatttttctggagtatttatctattactattgctttaacttgcaccttagtacttgcaattctggaatatcaaaaagtgcaagatttttcat...

Basic information

species Glycine max
transcript GLYMA13G20980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G09920.1 (Arabidopsis thaliana), 5'ss of exon 4
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATTCCTTCAAGTGGTCAAAAGgtaatgtgc----atttttctgga-----gtatttatctattactattgctttaacttgcaccttagtac-ttgcaattctggaatatcaaaaagtgcaagattttt-cat----------------------------------------------------------------------
 ||||||||||| || ||||| ||||||||||||||||| || || || || || ||||| ||||| || ||||| || |  || |||||||||||||||||  ||  |    ||   ||  ||      | || || | ||| |||   ||    ||| |  |    || ||||        ||||| |   || | |  | | |  |||                                                                      
GATGCTTCCAGATTACCATCATCATGTGAAGACATATGAGAACACCCTCATTACTAAATTCTTTGGCCTTCACAGAATCAAACCATCAAGTGGTCAAAAGgtcctgaaccaaaatacctcaagattctgattttgattttttattatca-ttagctttgaagttgccgacattgctgcctctaaatatgatgtagagtagaactctaacattagagcaacatttggaaatccaaatcaatcttaaaactaactatgtttgaaaatttctcttccattgcag

upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g04700.t01 (Vitis vinifera), 5'ss of exon 4
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATTCCTTCAAGTGGTCAAAAGgtaatgtgcatttttctggagtatttatctattactattgct-ttaacttgcaccttagtact-tgc--aattctggaatatcaaaaagtgcaagatttttcat
|||||||||| |||||||||| ||||||  | |  |||| || ||||| || ||||||||||||||||| |||||||| |  ||||||||||| |||||||||||   ||  ||  || | || |||| |  || ||||||  ||   || ||   ||| |   |||  | |||||||   | |||      || ||||   | 
AATGCTTCCAAACTATCATCATCATGTGCGGTCCCATGAGAACACACTCATAACAAAATTTTTTGGTCTTCACAGGATCAAACCTTCAAGTGGGCAAAAGgtaat---caaattaatgaattaattattt-ctaatattgcagttctttttcaatctagaatgatgcctagttctggatctttaaagttactaaaatttcggaa

upper sequence: GLYMA13G20980.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S311_23V6.1 (Physcomitrella patens), 5'ss of exon 5
AATGCTTCCAGACTATCATCACCATGTGAAGACATATGATAATACACTTATCACAAAATTTTTTGGTCTGCACAGGATTATTCCTTCAAGTGGTCAAAAGgtaatgtgcatttttctggagtatttatctattactattgctttaacttgcaccttagtacttgcaattctggaatatcaaaaagtgcaagatttttcat-----
 |||||  |||  || |||| ||||||||| || || ||||||||||| |||||||| ||||||||||| ||  | ||||  || |   | ||||||||||| || | |  |||| ||  | ||  | ||| |  ||    || || ||  |  ||  | ||||    | |  | | ||||   |     |  |  | ||     
TATGCTCGCAGCATACCATCTCCATGTGAAAACTTACGATAATACACTCATCACAAAGTTTTTTGGTCTTCATCGCATTAAGCCATACGGAGGTCAAAAGgtgatttcc--ttttttgacgcatgca-ctact-ttacacattcaattt-tagattctttcttgtctatttaaattgtcaacttgcttttgtatgattatattag