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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgcttcgctcacattgtagattactgatatatatttcattaagtttgaatggaatcgtatctatatctgtcattcaaacttcaaattacatgtc...

Basic information

species Glycine max
transcript GLYMA12G05980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g01650.t01 (Vitis vinifera), 5'ss of exon 5
GCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgcttcgctcacattgtagat--tactga-tatatatttcattaagtttgaatggaatcgtatcta--tatctgtcattcaaacttcaaattacatgtc--
||| |||||||| |||  || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||  |   | ||| | ||   |  ||| |  |    |||  ||     ||     | ||  ||    |   || |||      | | |||   || |  
GCTGATGACATATCTGGATTTCATGCCAATACACATATCCCAATTGTTGTTGGAGCTCAAATGCGGTATGAAATCACTGGTGATCCACTTTATAAGgtaaattgctgtggataaattctggacagtcttgactgcaatcgtcaacaaagacaaagatgtttgtgcctgatcacaagttattgttctataatattgtgtgacag

upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
GCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgcttcgctcacattgtagattactg-atatatatttcattaagtttgaatggaatcgtatctatatctgtcattcaaacttca-aattacatgtc--
||| ||  |||| ||| ||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| |||| || ||||||||||| ||||||| |||||      | ||| | ||| | |  | ||||| |  |  || |   ||||   ||  | ||    ||    |     | | | |||||  ||    
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatc-aaatgtgttctaaactg---ctaatgtgtgtgcctaataattatgtgattc

upper sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 6
GCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgcttcgctcacattgtagattactgatatatatttcattaagtttgaatggaatcgtatctatatctgtcattcaaacttcaaattacatgtc-
||  || |  |  ||| ||| ||| | ||||||||||| ||||||||||||||| |||| ||||| |||||  | ||  |||||| | | || |  ||   || |  | || ||    ||| || |  |  |  |||   | | | |     | |  |   |   |    |   ||   |  |  || ||||  |  
GCGGATCATCTTTCTGGTTTTCATTCGAATACACATATTCCAATTGTTGTTGGAGCTCAGATGCGTTATGAGGTGACCAGCGATCTAATCTACAGAgtatgttacccccctaacgcaatagtttcccaaagttgattaagtcatgctctgcggcatacactttcttggtagctcttttgagct-gaagtacaactgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208147593|gb|GD944518.1|GD944518
EST:     TTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAG                         CAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCA
genomic: TTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgct ... ggtcttttagCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCA