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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgcccctacttaatggaagcttgatagatagatcacaattgtgaattatctctgctcagatactcatatgtgaggcttcgcag

Basic information

species Glycine max
transcript GLYMA12G01650.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01650.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g02550.t01 (Vitis vinifera), 5'ss of exon 5
GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgcccctacttaatggaagcttgatagatagatcacaattgtgaattatctctgctcagatactcatatgtgaggcttcgcag
|||| |  |  | ||||||||||| || ||||||| ||| |||||| |||| ||||||||||| |||||||||||||||||||||| | | || || ||||| |  | ||  |  |   |   |||| |  |   |  |  |     || ||  |        ||||  |   | |  | | ||||
GCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAGgtatatatcgcttttctacttagaattgagactt---tttctgtataacatcatggcccactgcttactgcttcttaacaccttgcag

upper sequence: GLYMA12G01650.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ07373 (Selaginella moellendorffii), 5'ss of exon 5
GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgcccctacttaatggaagcttgatagatagatcacaattgtgaattatctctgctcagatactcatatgtgaggcttcgcag
||| |      | |||||||| || ||||||||||| |||||||| ||||| |||||||| ||  | || ||  ||||||| || | | | || || ||||    |   |||||| |  || ||||| |  || |       | |    | ||   |                             
GCACGCGGCCTTGTTTGAAGAGATCGGTGGTGAATACAACATTCCTCTGGCTGCCAATGCAAAAACCGTGAGACAGTTTGACGAAGGATTAACTCGAGgta---acgagtacttagtaaaaacttga-acttaaactgtgtgttttggctttcatag-----------------------------

upper sequence: GLYMA12G01650.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27261 (Selaginella moellendorffii), 5'ss of exon 5
GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgcccctacttaatggaagcttgatagatagatcacaattgtgaattatctctgctcagatactcatatgtgaggcttcgcag
||| |      | |||||||| || ||||||||||| |||||||| ||||| |||||||| ||  | || ||  ||||||| || | | | || || ||||    |   ||||||||  || ||||| |  || |       | |    | ||   |                             
GCACGCGGCCTTGTTTGAAGAGATCGGTGGTGAATACAACATTCCTCTGGCGGCCAATGCAAAAACCGTGAGACAGTTTGACGAAGGATTAACTCGAGgta---acgagtacttaataaaaccttga-acttacactgtgtgttttggctttcgtag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717157|gb|BW657620.1|BW657620
EST:     GGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG                         TTTCTTTTGGATTNCA-GTCTGTGGACGAATACTATTCTAAATTCA-GCAG
genomic: GGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgccc ... ggcttcgcagTTTCTTTTGGATT-CAAGTCTGTGGACGAATACTATTCTAA-TTCAAGCAG
EST: gi|51341796|gb|CO983113.1|CO983113
EST:     GGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG                         TTTCTTTTGGATTCAAGTCTGTGGACGAATACTATTCTAATTCAAGCAGTT
genomic: GGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTGgtatgtgccc ... ggcttcgcagTTTCTTTTGGATTCAAGTCTGTGGACGAATACTATTCTAATTCAAGCAGTT