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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGgtaagatgtaagacctactgtatgtgtgtatatttatatacctaactgcagttggatgtctctataaaaagcacattgaatgcctttatctttggaaatc...

Basic information

species Glycine max
transcript GLYMA11G36810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 5'ss of exon 6
TTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGgtaagat-gtaagacctactgtatgtgtgtatatttatatacctaactgcagttggatgtctctataaaaagcacattgaatgcctttatctttggaaatc-
|| ||||||||||| || || ||||| ||||| |||||||| ||||| ||||| || || || ||||||||||| ||     | || || || ||||||||| ||||  || |     ||| | || ||| || ||| |     |    |||  | |  ||    |       || ||   |    | |    ||    |  
TTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGgtgagatcatatgcagcgctgga-gt-tgtttaattaaaccaagattcccagaagtacatcgtattggtggttacttttgttttactaacacatgactgtaa

upper sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 6
TTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGgtaagatgtaagacctactgtatgtgtgtatatttatatacctaactgcagttggatgtctctataaaaagcacattgaatgcct---ttatctttggaaatc---
|| || |||||||| || || ||||||||||||||||||| ||| |||||||| |||||| ||||||| || || |||||||| || || || ||||||||| |||    | || ||  | || |   ||  |     ||   | |||   |   || |  ||     ||| | ||| ||    |    |||||   |||| |   
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgc---tagtcagctgttat--aatattactgcttcaagta-attaaacttttaaactatctgatgaaaacagt

upper sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 6
TTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGgtaag--------atgtaagacctactgtatgtg-----tgtatatttatatacc-taactgcagttggatgtctctataaaaagcacattgaatgcctttatctttggaaatc
|| || |||||||| ||||||||||| ||||| | |||||  ||||| || || || || ||||||||||| || || |||||||| || || ||||||||| ||        | | |  |    |  ||| |      || || ||| ||||   | |   || ||  || | ||| | ||    | ||| | ||                  
TTGCAGTGGAAGGAACATTCTATGATATTTGCAAAGCCAAGCAAGCCAGGGGAATTCAGCCGATTTGATTTCCCTGAAGTCCTTCCTGCACCCTTAAATGgtgagcaactcataagcatcattagcaatatttaagtcttgcatctttgtatatgatgagcacaatttaatttttcttttaatgaaaaattcagtgtgac--------------